vepyr
Datasets
All datasets matching “vepyr”vepyr_116_GRCh38_plugin_clinvar
vepyr plugin cache — ClinVar (GRCh38, VEP 116)
A prebuilt, frequency-tiered Parquet cache of ClinVar clinical-significance
annotations for use with vepyr, the Rust/DataFusion
VEP-compatible variant annotation engine. It reproduces the CSQ output of Ensembl VEP 116
run with ClinVar as a --custom annotation, without requiring the upstream VCF at
annotation time.
Source version
This is the fact you most likely came here for.
Source file
clinvar.vcf.gz… See the full description on the dataset page: https://huggingface.co/datasets/biodatageeks/vepyr_116_GRCh38_plugin_clinvar.vepyr_116_GRCh38_plugin_alphamissense
vepyr plugin cache — AlphaMissense (GRCh38, VEP 116)
A prebuilt, frequency-tiered Parquet cache of AlphaMissense pathogenicity
predictions for use with vepyr, the Rust/DataFusion
VEP-compatible variant annotation engine. It reproduces the CSQ output of Ensembl
VEP 116's --plugin AlphaMissense without requiring the upstream TSV or the Perl plugin
at annotation time.
Source version
This is the fact you most likely came here for.
Source file… See the full description on the dataset page: https://huggingface.co/datasets/biodatageeks/vepyr_116_GRCh38_plugin_alphamissense.vepyr_116_GRCh38_plugin_spliceai
vepyr plugin cache — SpliceAI (GRCh38, VEP 116)
A prebuilt, frequency-tiered Parquet cache of SpliceAI splice-altering predictions for
use with vepyr, the Rust/DataFusion VEP-compatible
variant annotation engine. It reproduces the CSQ output of Ensembl VEP 116's
--plugin SpliceAI without requiring the upstream 400 GB-class VCF or the Perl plugin at
annotation time.
Source version
This is the fact you most likely came here for.
Source file… See the full description on the dataset page: https://huggingface.co/datasets/biodatageeks/vepyr_116_GRCh38_plugin_spliceai.vepyr_116_GRCh38_plugin_phenotypeorthologous
vepyr PhenotypeOrthologous plugin cache — Ensembl 116, GRCh38
Prebuilt vepyr plugin cache for Ensembl VEP's
PhenotypeOrthologous
plugin: phenotypes of the rat and mouse orthologues of the Ensembl gene overlapping a variant.
Built with vepyr.build_plugin_cache("phenotypeorthologous", "v0.2.0 (7736bbead98eb57e13f88e5074fa2b7d2e844121)") from the
vepyr-plugins
manifest, against the release-116 GRCh38 merged variation cache.
Source
File… See the full description on the dataset page: https://huggingface.co/datasets/biodatageeks/vepyr_116_GRCh38_plugin_phenotypeorthologous.vepyr_116_GRCh38_ensembl
vepyr cache — Ensembl VEP 116, GRCh38 (Ensembl)
A Parquet conversion of the Ensembl VEP 116 homo_sapiens_ensembl cache for GRCh38, for
use with vepyr, a Rust/DataFusion variant annotation
engine that reproduces VEP's consequence calls. It replaces VEP's Perl-serialised,
gzipped cache files with columnar Parquet that DuckDB, Polars, DataFusion or Spark can read
directly.
Ensembl/GENCODE transcripts only. This is the default VEP cache flavour. The equivalent VEP invocation uses… See the full description on the dataset page: https://huggingface.co/datasets/biodatageeks/vepyr_116_GRCh38_ensembl.vepyr_116_GRCh38_plugin_cadd
vepyr plugin cache — CADD v1.7 (GRCh38, VEP 116)
A prebuilt, frequency-tiered Parquet cache of CADD deleteriousness scores for use with
vepyr, the Rust/DataFusion VEP-compatible variant
annotation engine. It reproduces the CSQ output of Ensembl VEP 116's --plugin CADD
without requiring the upstream whole-genome TSVs or the Perl plugin at annotation time.
⚠️ Non-commercial use only. See Licence below.
Source version
This is the fact you most likely came here for.… See the full description on the dataset page: https://huggingface.co/datasets/biodatageeks/vepyr_116_GRCh38_plugin_cadd.