trait
Datasets
All datasets matching “trait”TraitGym
🧬 TraitGym
Benchmarking DNA Sequence Models for Causal Regulatory Variant Prediction in Human Genetics
🏆 Leaderboard: https://huggingface.co/spaces/songlab/TraitGym-leaderboard
⚡️ Quick start
Load a datasetfrom datasets import load_dataset
dataset = load_dataset("songlab/TraitGym", "mendelian_traits", split="test")
Example notebook to run variant effect prediction with a gLM, runs in 5 min on Google Colab: TraitGym.ipynb
🤗 Resources… See the full description on the dataset page: https://huggingface.co/datasets/songlab/TraitGym.omim_traitgym
OMIM regulatory variants
Predictions from all models
TRAIT
Dataset Card for TRAIT Benchmark
Dataset Summary
Data from: Do LLMs Have Distinct and Consistent Personality? TRAIT: Personality Testset designed for LLMs with Psychometrics
TRAIT is a comprehensive multi-dimensional personality test designed to assess LLM personalities across eight traits from the Dark Triad and BIG-5 frameworks. To enhance validity and reliability, TRAIT expands upon 71 validated human questionnaire items to create a dataset 112 times larger… See the full description on the dataset page: https://huggingface.co/datasets/snupilab/TRAIT.bacbench-phenotypic-traits-dna
Dataset for phenotypic traits prediction from whole bacterial genomes (DNA)
A dataset of 24,462 bacterial genomes across 15,477 species with diverse phenotypic traits as labels.
The genome protein sequences have been extracted from GenBank. Each row contains the whole bacterial genome DNA, with the DNA from different contigs separated by a space.
The phenotypic traits have been extracted from a number of sources [1, 2, 3] and include a diversity of categorical phenotypes. We exclude… See the full description on the dataset page: https://huggingface.co/datasets/macwiatrak/bacbench-phenotypic-traits-dna.bacbench-phenotypic-traits-protein-sequences
Dataset for phenotypic traits prediction from whole-bacterial genomes (protein sequences)
A dataset of 24,462 bacterial genomes across 15,477 species with diverse phenotypic traits as labels.
The genome protein sequences have been extracted from GenBank. Each row contains a list of protein sequences present in the
bacterial genome, ordered by their location on the chromosome and plasmids.
The phenotypic traits have been extracted from a number of sources [1, 2, 3] and include a… See the full description on the dataset page: https://huggingface.co/datasets/macwiatrak/bacbench-phenotypic-traits-protein-sequences.bioscan-traits
Dataset Card for BIOSCAN-Traits
Dataset Details
Dataset Description
BIOSCAN-Traits is a trait-level annotation dataset for fine-grained insect imagery. Derived from BIOSCAN-5M, it provides morphology-centric natural language trait descriptions automatically generated by a two-stage pipeline: (1) a Sparse Autoencoder (SAE) trained on DINOv2 visual features identifies species-level salient visual parts (wings, legs, antennae, etc.), and (2) a Multimodal LLM… See the full description on the dataset page: https://huggingface.co/datasets/osunlp/bioscan-traits.