thermostability
Thermostability
Thermostability Dataset
Description: In materials science and molecular biology, thermostability is the ability of a substance to resist irreversible change in its chemical or physical structure, often by resisting decomposition or polymerization, at a high relative temperature.
Number of labels: 1
Problem Type: regression
Columns:
aa_seq: protein amino acid sequence
Github
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability.Dataset-Thermostability-FLIP
Description
Thermostability prediction is a regression task where each input protein x is mapped to a label y ∈ R, corresponding to the thermostability of x.
Splits
Protein Format: SA sequence (AF2)
The dataset is from FLIP: Benchmark tasks in fitness landscape inferencefor proteins. We employ all proteins from the“Human-cell”splits (proteins that lack AF2 structures are removed), and split them based on 70% structure similarity (see ProteinShake), with the number of… See the full description on the dataset page: https://huggingface.co/datasets/SaProtHub/Dataset-Thermostability-FLIP.Thermostability_AlphaFold2
Thermostability Dataset with AlphaFold2 Structural Sequence
Description: In materials science and molecular biology, thermostability is the ability of a substance to resist irreversible change in its chemical or physical structure, often by resisting decomposition or polymerization, at a high relative temperature.
Number of labels: 1
Problem Type: regression
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability_AlphaFold2.Thermostability_ESMFold
Thermostability Dataset with ESMFold Structural Sequence
Description: In materials science and molecular biology, thermostability is the ability of a substance to resist irreversible change in its chemical or physical structure, often by resisting decomposition or polymerization, at a high relative temperature.
Number of labels: 1
Problem Type: regression
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability_ESMFold.Thermostability_PDB
Thermostability PDB Dataset
Github
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models
https://github.com/tyang816/SES-Adapter
VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning
https://github.com/ai4protein/VenusFactory
Citation
Please cite our work if you use our dataset.
@article{tan2024ses-adapter,
title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability_PDB.Thermostability_AlphaFold2_PDB
Thermostability PDB Dataset
Github
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models
https://github.com/tyang816/SES-Adapter
VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning
https://github.com/ai4protein/VenusFactory
Citation
Please cite our work if you use our dataset.
@article{tan2024ses-adapter,
title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability_AlphaFold2_PDB.