senescence
xenium-senescence-demo
Xenium Senescence Benchmark (Demo Preview)
Note: This is a demo preview with 234 sample images. The full dataset (62K labeled cells across 2 tissue samples and 3 magnification scales) will be released upon paper publication.
Overview
A benchmark dataset for predicting cellular senescence from spatial transcriptomics (Xenium) cell images. Cell images are DAPI fluorescence microscopy captures at multiple magnification scales, labeled with senescence scores derived from… See the full description on the dataset page: https://huggingface.co/datasets/Xiang-zx-zx/xenium-senescence-demo.xenium-senescence-data
Xenium Senescence Dataset
Cell morphology images (64x64 grayscale) from Xenium spatial transcriptomics, with senescence scores.
Structure
data_ccdm/
xenium_{tissue}_64x64_aligned.h5 # Images + senescence scores (aligned version)
checkpoints/
latents_{tissue}.npy # VAE-encoded latents (128-dim)
ot_pairs_{tissue}_typed.npy # Within-cell-type OT pairs (cosine cost)
celltype_ids_{tissue}.npy # Integer cell type IDs… See the full description on the dataset page: https://huggingface.co/datasets/Xiang-zx-zx/xenium-senescence-data.