pubmed-central
STXBP1_PubMed_Central_Multimodal_Dataset
STXBP1 PubMed Central Multimodal Dataset v2 (12-13-2025)
A comprehensive multimodal dataset for training vision-language models on biomedical scientific literature, with focus on STXBP1-related neurological research.
🆕 Version 2 Updates (December 2025)
497,360 training examples (up from ~31K)
170,591 matched figure-image pairs (99.7% match rate)
Full captions preserved (no truncation)
Multiple training formats for different use cases
Validated response lengths for… See the full description on the dataset page: https://huggingface.co/datasets/SkyWhal3/STXBP1_PubMed_Central_Multimodal_Dataset.pile_pubmed-centralscaling_mia_the_pile_00_PubMed_Centralpile-pubmed_central
Dataset Creation Process
These subsets were created by streaming over the rows from monology/pile-uncopyrighted and filtering by the meta column. Each subset is generally limited to the first 100,000 qualifying rows encountered.
PEX10_PubMed_Central_MultiModal
🧬🔬 PEX10 PubMed Central Multimodal Dataset
A vision–language dataset of peroxisome-biology figures paired with their published captions — for training and evaluating multimodal models on PEX10 and peroxisome-biogenesis-disorder literature.
Figure ↔ caption pairs in LLaVA format, extracted from PEX10-related PubMed Central Open Access (CC-BY) articles. 2,985 figure images become ~9,700 multimodal training records across four complementary task formats — plain captioning… See the full description on the dataset page: https://huggingface.co/datasets/SkyWhal3/PEX10_PubMed_Central_MultiModal.stxbp1-pubmed-central-fulltext
source_datasets:
- PubMed Central
STXBP1 PubMed Central Full-Text Dataset v2
A comprehensive collection of 31,786 full-text scientific articles from PubMed Central related to STXBP1, synaptic function, and neurological research.
🆕 Version 2 Updates (December 2025)
Complete re-extraction with improved HTML parsing
Full main text with proper section headers
Enhanced metadata extraction
99.7% figure-image matching (see companion multimodal dataset)… See the full description on the dataset page: https://huggingface.co/datasets/SkyWhal3/stxbp1-pubmed-central-fulltext.