perturb-seq
perturb_23_null_sequence_inistd1e-4_clip_0.5_3.0_c10.0_lr5e-4_qwen2-1_5b_step720perturb_23_null_sequence_inistd1e-4_clip_0.5_3.0_c10.0_lr5e-4_qwen2-1_5b_step60perturb_23_null_sequence_inistd1e-4_clip_0.5_3.0_c10.0_lr5e-4_qwen2-1_5b_step520perturb_23_null_sequence_inistd1e-4_clip_0.5_3.0_c10.0_lr5e-4_qwen2-1_5b_step580perturb_23_null_sequence_inistd1e-4_clip_0.5_3.0_c10.0_lr5e-4_qwen2-1_5b_step800SmolLM3-3B-LLM4Math-V2data-Sequential-perturbationsignalonly-300stepsperturb_23_null_sequence_inistd1e-4_clip_0.5_3.0_c10.0_lr5e-4_qwen2-1_5b_step160perturb_23_null_sequence_inistd1e-4_clip_0.5_3.0_c10.0_lr5e-4_qwen2-1_5b_step620
perturbseq_normalized
CellClip public normalized perturbation single-cell release
This public repository contains the source-cleared, human, cell-level portion
of CellClip Stage 1: 254 H5AD files, 12,718,270 cells, and
260,859,318,437 payload bytes. These are processed derivatives rather than
the original raw download archives.
Source partition
Units
Cells
Reference cells
Effect cells
scPerturb (23 genepert + 229 chempert)
252
4,774,802
397,528
4,377,274
XCell / X-Atlas Orion (genepert)… See the full description on the dataset page: https://huggingface.co/datasets/cfy2yue/perturbseq_normalized.perturb-seq-pseudo-pairing-benchmarks
Perturb-seq Pseudo-pairing Benchmarks
Dataset Summary
This repository provides processed single-cell perturbation transcriptomic datasets and representative pseudo-control pairings used to study how pseudo-control construction affects perturbation modeling.
Single-cell perturbation assays are destructive: the same cell cannot be observed before and after perturbation. Cell-level modeling therefore requires an estimated or sampled unperturbed counterpart, referred… See the full description on the dataset page: https://huggingface.co/datasets/JFLa/perturb-seq-pseudo-pairing-benchmarks.perturb_seqPerturb-seq_dataset_for_training