operon
Datasets
All datasets matching “operon”bacbench-operon-identification-protein-sequences
Dataset for operon identification in bacteria (Protein sequences)
A dataset of 4,073 operons across 11 bacterial genomes species.
The operon annotations have been extracted from Operon DB and the genome protein sequences have been extracted from GenBank. Each row contains a set of protein sequences present in the genome, represented
by a list of protein sequences from different contigs.
We extracted high-confidence (i.e. known) operons from Operon DB, filtered out non-contigous… See the full description on the dataset page: https://huggingface.co/datasets/macwiatrak/bacbench-operon-identification-protein-sequences.operon-identification-long-read-rna-sequencing-protein-sequences
Dataset for operon identification from long-read RNA sequencing
A dataset of annotated operons across 5 distinct bacterial strains. The operons were annotated by running and analysing long-read RNA sequencing and identifying genes
located on the same transcripts.
The genome protein sequences have been extracted from GenBank. Each row contains whole bacterial genome represented by an ordered list
of protein sequences.
Usage
For a complete example on how to read and use… See the full description on the dataset page: https://huggingface.co/datasets/macwiatrak/operon-identification-long-read-rna-sequencing-protein-sequences.cyano_operonic_pairvibrio_operonic_pairecoli_operonic_pairbacbench-operon-identification-dna
Dataset for operon identification in bacteria (DNA)
A dataset of 4,073 operons across 11 bacterial genomes species.
The operon annotations have been extracted from Operon DB and the genome DNA sequences have been extracted from GenBank. Each row contains whole bacterial genome, represented
by a list of DNA sequences from different contigs.
We extracted high-confidence (i.e. known) operons from Operon DB, filtered out non-contigous operons and only kept genomes with at least 9 known… See the full description on the dataset page: https://huggingface.co/datasets/macwiatrak/bacbench-operon-identification-dna.