nlm
Datasets
All datasets matching “nlm”nlm-cxr_reportsnlmchem
Dataset Details
Dataset Description
NLM-Chem is a new resource for chemical entity recognition in PubMed full text literature.
Curated by:
License: CC BY 4.0
Dataset Sources
data source
publication
Citation
BibTeX:
@article{Islamaj2021,
author = {Islamaj, R. and Leaman, R. and Kim, S. and Lu, Z.},
title = {NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature},
journal = {Nature Scientific Data},
volume = {8}… See the full description on the dataset page: https://huggingface.co/datasets/jablonkagroup/nlmchem.nlm_geneNLM-Gene consists of 550 PubMed articles, from 156 journals, and contains more than 15 thousand unique gene names, corresponding to more than five thousand gene identifiers (NCBI Gene taxonomy). This corpus contains gene annotation data from 28 organisms. The annotated articles contain on average 29 gene names, and 10 gene identifiers per article. These characteristics demonstrate that this article set is an important benchmark dataset to test the accuracy of gene recognition algorithms both on multi-species and ambiguous data. The NLM-Gene corpus will be invaluable for advancing text-mining techniques for gene identification tasks in biomedical text.NLMCXR
Dataset Card for "NLMCXR"
More Information needed
nlmchemNLM-Chem corpus consists of 150 full-text articles from the PubMed Central Open Access dataset,
comprising 67 different chemical journals, aiming to cover a general distribution of usage of chemical
names in the biomedical literature.
Articles were selected so that human annotation was most valuable (meaning that they were rich in bio-entities,
and current state-of-the-art named entity recognition systems disagreed on bio-entity recognition.NLM-LitArch-Open-Access-Subset-Textbooks
Special Notice
For this dataset, we leveraged $8,226$ open-access medical textbooks from the NLM LitArch Open Access Subset, hosted by the U.S. National Library of Medicine.
Agentic Medical RAG
Agentic Memory-augmented Retrieval and Evidence Grounding in Medicine
🎉 Announcements
[2026.06.01] Our Agentic Medical RAG manuscript is published in International Journal of Medical Informatics. Link to the paper and Supplementary Material.… See the full description on the dataset page: https://huggingface.co/datasets/vkola-lab/NLM-LitArch-Open-Access-Subset-Textbooks.