mammals
Datasets
All datasets matching “mammals”genomes-v4-genome_set-mammals-intervals-v1_255_128-id1_cov1genomes-v2-genome_set-mammals-intervals-v2_512_256genomes-v4-genome_set-mammals-intervals-v5_256_128genomes-v4-genome_set-mammals-intervals-v16_254_127-id0.3_cov0.3vertebrate-v1-cds_mammals_only
marin-dna/vertebrate-v1-cds_mammals_only
Human-anchored 255 bp vertebrate sequences from the Zoonomia 447-mammal Cactus alignment. This
draft covers the cds region cohort with mammals_only species
scope and preserves source FASTA/2bit letter case.
Anchor eligibility uses the pipeline's pinned phyloP conservation filter.
Sequence case is independent of that filter: lowercase bases preserve source
repeat masking, uppercase bases preserve source non-repeat-masked sequence, and… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/vertebrate-v1-cds_mammals_only.genomes-v5-genome_set-mammals-intervals-v5_255_128
bolinas-dna/genomes-v5-genome_set-mammals-intervals-v5_255_128
Mammals CDS (v5) sequences — 255 bp DNA windows
for genomic language model pretraining.
Part of the bolinas-dna/genomes-v5 training-dataset family produced by the
snakemake/training_dataset pipeline (commit
8db58254831f). Each repo in the family is one
(genome_set, region-recipe) combination.
Size
41,848,032 sequences across 64 data/train/*.jsonl.zst shards
(reverse complements included). This is an… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-mammals-intervals-v5_255_128.