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Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.

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01marin-dna /genomes-v4-genome_set-mammals-intervals-v1_255_128-id1_cov1text10M<n<100M0 likes665 downloads7mo agoHugging Face02marin-dna /genomes-v4-genome_set-mammals-intervals-v16_254_127-id0.3_cov0.3text10M<n<100M0 likes482 downloads7mo agoHugging Face03gonzalobenegas /genomes-v2-genome_set-mammals-intervals-v2_512_256text10M<n<100M0 likes473 downloads9mo agoHugging Face04marin-dna /genomes-v4-genome_set-mammals-intervals-v5_256_128text10M<n<100M0 likes363 downloads8mo agoHugging Face05marin-dna /genomes-v5-genome_set-mammals-intervals-v5_255_128 bolinas-dna/genomes-v5-genome_set-mammals-intervals-v5_255_128 Mammals CDS (v5) sequences — 255 bp DNA windows for genomic language model pretraining. Part of the bolinas-dna/genomes-v5 training-dataset family produced by the snakemake/training_dataset pipeline (commit 8db58254831f). Each repo in the family is one (genome_set, region-recipe) combination. Size 41,848,032 sequences across 64 data/train/*.jsonl.zst shards (reverse complements included). This is an… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-mammals-intervals-v5_255_128.text10M<n<100M0 likes335 downloads4mo agoHugging Face06marin-dna /genomes-v4-genome_set-mammals-intervals-v1_256_128text10M<n<100M0 likes330 downloads8mo agoHugging Face07marin-dna /vertebrate-v1-cds_mammals_only marin-dna/vertebrate-v1-cds_mammals_only Human-anchored 255 bp vertebrate sequences from the Zoonomia 447-mammal Cactus alignment. This draft covers the cds region cohort with mammals_only species scope and preserves source FASTA/2bit letter case. Anchor eligibility uses the pipeline's pinned phyloP conservation filter. Sequence case is independent of that filter: lowercase bases preserve source repeat masking, uppercase bases preserve source non-repeat-masked sequence, and… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/vertebrate-v1-cds_mammals_only.tabular10M<n<100M0 likes329 downloads2mo agoHugging Face08marin-dna /genomes-v5-genome_set-mammals-intervals-v1_255_128 bolinas-dna/genomes-v5-genome_set-mammals-intervals-v1_255_128 Mammals promoters (v1) sequences — 255 bp DNA windows for genomic language model pretraining. Part of the bolinas-dna/genomes-v5 training-dataset family produced by the snakemake/training_dataset pipeline (commit 8db58254831f). Each repo in the family is one (genome_set, region-recipe) combination. Size 12,926,544 sequences across 64 data/train/*.jsonl.zst shards (reverse complements included). This is… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-mammals-intervals-v1_255_128.text10M<n<100M0 likes235 downloads4mo agoHugging Face09marin-dna /genomes-v4-genome_set-mammals-intervals-v15_256_128text1M<n<10M0 likes213 downloads8mo agoHugging Face10gonzalobenegas /genomes-v2-genome_set-mammals-intervals-v1_512_256text1M<n<10M0 likes172 downloads9mo agoHugging Face11marin-dna /genomes-v5-genome_set-mammals_seg20-intervals-v32_255_128 bolinas-dna/genomes-v5-genome_set-mammals_seg20-intervals-v32_255_128 20 mammals projected phastCons enhancers (v32) sequences — 255 bp DNA windows for genomic language model pretraining. Part of the bolinas-dna/genomes-v5 training-dataset family produced by the snakemake/training_dataset pipeline (commit 8db58254831f). Each repo in the family is one (genome_set, region-recipe) combination. Size 6,648,120 sequences across 64 data/train/*.jsonl.zst shards (reverse… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-mammals_seg20-intervals-v32_255_128.text1M<n<10M0 likes169 downloads4mo agoHugging Face12marin-dna /genomes-v5-genome_set-enhancer_seg_mammals_v1-intervals-v20_255_128 bolinas-dna/genomes-v5-genome_set-enhancer_seg_mammals_v1-intervals-v20_255_128 20 mammals (segmentation) segmentation enhancers (v20) sequences — 255 bp DNA windows for genomic language model pretraining. Part of the bolinas-dna/genomes-v5 training-dataset family produced by the snakemake/training_dataset pipeline (commit 8db58254831f). Each repo in the family is one (genome_set, region-recipe) combination. Size 8,672,102 sequences across 64… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-enhancer_seg_mammals_v1-intervals-v20_255_128.text1M<n<10M0 likes168 downloads4mo agoHugging Face13marin-dna /genomes-v5-genome_set-mammals_seg20-intervals-v30_255_128 bolinas-dna/genomes-v5-genome_set-mammals_seg20-intervals-v30_255_128 20 mammals projected conserved enhancers (v30) sequences — 255 bp DNA windows for genomic language model pretraining. Part of the bolinas-dna/genomes-v5 training-dataset family produced by the snakemake/training_dataset pipeline (commit 8db58254831f). Each repo in the family is one (genome_set, region-recipe) combination. Size 6,549,730 sequences across 64 data/train/*.jsonl.zst shards (reverse… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-mammals_seg20-intervals-v30_255_128.text1M<n<10M0 likes167 downloads4mo agoHugging Face14marin-dna /genomes-v5-genome_set-mammals_seg20-intervals-v33_255_128 bolinas-dna/genomes-v5-genome_set-mammals_seg20-intervals-v33_255_128 20 mammals projected phastCons enhancers (≥50 bp) (v33) sequences — 255 bp DNA windows for genomic language model pretraining. Part of the bolinas-dna/genomes-v5 training-dataset family produced by the snakemake/training_dataset pipeline (commit 8db58254831f). Each repo in the family is one (genome_set, region-recipe) combination. Size 4,791,766 sequences across 64 data/train/*.jsonl.zst shards… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-mammals_seg20-intervals-v33_255_128.text1M<n<10M0 likes139 downloads4mo agoHugging Face15marin-dna /genomes-v5-genome_set-mammals_seg20-intervals-v31_255_128 bolinas-dna/genomes-v5-genome_set-mammals_seg20-intervals-v31_255_128 20 mammals projected conserved enhancers (≥50 bp) (v31) sequences — 255 bp DNA windows for genomic language model pretraining. Part of the bolinas-dna/genomes-v5 training-dataset family produced by the snakemake/training_dataset pipeline (commit 8db58254831f). Each repo in the family is one (genome_set, region-recipe) combination. Size 4,112,634 sequences across 64 data/train/*.jsonl.zst shards… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-mammals_seg20-intervals-v31_255_128.text1M<n<10M0 likes139 downloads4mo agoHugging Face16emarro /mammals_32ktabular1M<n<10M0 likes138 downloads3mo agoHugging Face17marin-dna /genomes-v4-genome_set-mammals-intervals-v1_255_128-id0.3_cov0.3text10M<n<100M0 likes117 downloads7mo agoHugging Face18marin-dna /genomes-v5-genome_set-mammals-intervals-v15_255_128 bolinas-dna/genomes-v5-genome_set-mammals-intervals-v15_255_128 Mammals downstream-of-CDS (v15) sequences — 255 bp DNA windows for genomic language model pretraining. Part of the bolinas-dna/genomes-v5 training-dataset family produced by the snakemake/training_dataset pipeline (commit 8db58254831f). Each repo in the family is one (genome_set, region-recipe) combination. Size 3,801,906 sequences across 64 data/train/*.jsonl.zst shards (reverse complements… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-mammals-intervals-v15_255_128.text1M<n<10M0 likes115 downloads4mo agoHugging Face19Hack90 /ref_seq_mammals_part_1tabular10K<n<100K0 likes51 downloads3y agoHugging Face20emarro /mammals_16ktabular1M<n<10M0 likes39 downloads4mo agoHugging Face21gonzalobenegas /genomes-v3-genome_set-mammals-intervals-v3_512_256text10M<n<100M0 likes30 downloads8mo agoHugging Face22Hack90 /ref_seq_mammals_part_2tabular10K<n<100K0 likes25 downloads3y agoHugging Face23josegg5 /watkins_marine_mammals_fullaudion<1K0 likes24 downloads6mo agoHugging Face24gonzalobenegas /genomes-v3-genome_set-mammals-intervals-v1_512_256text1M<n<10M0 likes18 downloads9mo agoHugging Face25gonzalobenegas /genomes-v3-genome_set-mammals-intervals-v2_512_256text10M<n<100M0 likes12 downloads9mo agoHugging Face26FrancophonIA /Termcat_Marine_Mammals [!NOTE] Dataset origin: https://live.european-language-grid.eu/catalogue/lcr/19294 Description Marine Mammals terms Citation Termcat Marine Mammals (2022). Version unspecified. [Dataset (Lexical/Conceptual Resource)]. Source: European Language Grid. https://live.european-language-grid.eu/catalogue/lcr/19294 translation0 likes8 downloads1y agoHugging Face27emarro /mammals_32k_tokenizedtimeseries1M<n<10M0 likes8 downloads3mo agoHugging Face28gonzalobenegas /genomes-mammals-balanced-v1tabular1M<n<10M0 likes5 downloads4y agoHugging Face29gonzalobenegas /genomes-mammals-balanced-v1-1024tabular1M<n<10M0 likes4 downloads4y agoHugging Face30emarro /test_annotated_mammalstabular100K<n<1M0 likes4 downloads6mo agoHugging Face

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