grch38
Datasets
All datasets matching “grch38”pevo-msa-grch38-19way
pevo-msa-grch38-19way (dataset Hub)
EN: Training data, project tables, and reproducibility artifacts for primate MSA variant-effect modeling.
中文： 灵长类 MSA 变异效应建模的训练数据与项目复现材料（不含模型权重）。
Results-status note (2026-07-29). The multi-seed metrics reported below are retained as historical registry records. They use an earlier scoring protocol and cohort convention, and are not comparable to the corrected strict-v2 results used for the final project conclusions. Do not use the values… See the full description on the dataset page: https://huggingface.co/datasets/jasperyeoh2/pevo-msa-grch38-19way.vepyr_116_GRCh38_plugin_clinvar
vepyr plugin cache — ClinVar (GRCh38, VEP 116)
A prebuilt, frequency-tiered Parquet cache of ClinVar clinical-significance
annotations for use with vepyr, the Rust/DataFusion
VEP-compatible variant annotation engine. It reproduces the CSQ output of Ensembl VEP 116
run with ClinVar as a --custom annotation, without requiring the upstream VCF at
annotation time.
Source version
This is the fact you most likely came here for.
Source file
clinvar.vcf.gz… See the full description on the dataset page: https://huggingface.co/datasets/biodatageeks/vepyr_116_GRCh38_plugin_clinvar.vepyr_116_GRCh38_plugin_alphamissense
vepyr plugin cache — AlphaMissense (GRCh38, VEP 116)
A prebuilt, frequency-tiered Parquet cache of AlphaMissense pathogenicity
predictions for use with vepyr, the Rust/DataFusion
VEP-compatible variant annotation engine. It reproduces the CSQ output of Ensembl
VEP 116's --plugin AlphaMissense without requiring the upstream TSV or the Perl plugin
at annotation time.
Source version
This is the fact you most likely came here for.
Source file… See the full description on the dataset page: https://huggingface.co/datasets/biodatageeks/vepyr_116_GRCh38_plugin_alphamissense.vepyr_116_GRCh38_plugin_spliceai
vepyr plugin cache — SpliceAI (GRCh38, VEP 116)
A prebuilt, frequency-tiered Parquet cache of SpliceAI splice-altering predictions for
use with vepyr, the Rust/DataFusion VEP-compatible
variant annotation engine. It reproduces the CSQ output of Ensembl VEP 116's
--plugin SpliceAI without requiring the upstream 400 GB-class VCF or the Perl plugin at
annotation time.
Source version
This is the fact you most likely came here for.
Source file… See the full description on the dataset page: https://huggingface.co/datasets/biodatageeks/vepyr_116_GRCh38_plugin_spliceai.GRCh38A dataset of all autosomal and sex chromosomes sequences from reference assembly GRCh38/hg38 1 and reached a total of 3.2 billion nucleotides.vepyr_116_GRCh38_plugin_phenotypeorthologous
vepyr PhenotypeOrthologous plugin cache — Ensembl 116, GRCh38
Prebuilt vepyr plugin cache for Ensembl VEP's
PhenotypeOrthologous
plugin: phenotypes of the rat and mouse orthologues of the Ensembl gene overlapping a variant.
Built with vepyr.build_plugin_cache("phenotypeorthologous", "v0.2.0 (7736bbead98eb57e13f88e5074fa2b7d2e844121)") from the
vepyr-plugins
manifest, against the release-116 GRCh38 merged variation cache.
Source
File… See the full description on the dataset page: https://huggingface.co/datasets/biodatageeks/vepyr_116_GRCh38_plugin_phenotypeorthologous.