esmfold
Datasets
All datasets matching “esmfold”esmfold2-assets
LevinHarness/esmfold2-assets — internal asset cache
This private dataset is an internal staging cache of third-party runtime
assets required by the Levin Harness plugin(s) listed below. It is not an
official distribution: nothing here is published under this account's own
terms, and it is not affiliated with or endorsed by any upstream project.
Ownership and licensing
Every file remains the property of its upstream authors.
Each file keeps its upstream license… See the full description on the dataset page: https://huggingface.co/datasets/LevinHarness/esmfold2-assets.PDB-Monomeric-Structure-ESMFold2
PDB-Monomeric-Structure-ESMFold2
Monomeric, protein-only PDB structure dataset for minimum ESMFold2-style
training. Each row is one eligible single-chain biological assembly with a
canonical amino-acid sequence input and all-atom protein labels in atom37.
Labels
atom37_positions: residue x 37 x 3 coordinates, with zeros for missing atoms.
atom37_mask: residue x 37 resolved-atom mask.
aatype, residue_index, auth_seq_id, insertion_code, residue_name, ca_mask.… See the full description on the dataset page: https://huggingface.co/datasets/Synthyra/PDB-Monomeric-Structure-ESMFold2.esmfold1-fp8-wasmDeepLocMulti_ESMFold
DeepLocMulti Dataset with ESMFold Structural Sequence
Description: Protein localization encompasses the processes that establish and maintain proteins at specific locations.
Number of labels: 10
Problem Type: single_label_classification
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary structure sequence
location: Specific location
Github
Simple, Efficient and Scalable Structure-aware Adapter… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepLocMulti_ESMFold.MetalIonBinding_ESMFold
MetalIonBinding Dataset with ESMFold Structural Sequence
Description: Metal-binding proteins are proteins or protein domains that chelate a metal ion.
Number of labels: 2
Problem Type: single_label_classification
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary structure sequence
ss3_seq: DSSP 3 secondary structure sequence
esm3_structure_seq: ESM3 structure sequence encoded by VQ-VAE
Github… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/MetalIonBinding_ESMFold.Thermostability_ESMFold
Thermostability Dataset with ESMFold Structural Sequence
Description: In materials science and molecular biology, thermostability is the ability of a substance to resist irreversible change in its chemical or physical structure, often by resisting decomposition or polymerization, at a high relative temperature.
Number of labels: 1
Problem Type: regression
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability_ESMFold.