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01LevinHarness /esmfold2-assets LevinHarness/esmfold2-assets — internal asset cache This private dataset is an internal staging cache of third-party runtime assets required by the Levin Harness plugin(s) listed below. It is not an official distribution: nothing here is published under this account's own terms, and it is not affiliated with or endorsed by any upstream project. Ownership and licensing Every file remains the property of its upstream authors. Each file keeps its upstream license… See the full description on the dataset page: https://huggingface.co/datasets/LevinHarness/esmfold2-assets.0 likes197 downloads11d agoHugging Face02Synthyra /PDB-Monomeric-Structure-ESMFold2 PDB-Monomeric-Structure-ESMFold2 Monomeric, protein-only PDB structure dataset for minimum ESMFold2-style training. Each row is one eligible single-chain biological assembly with a canonical amino-acid sequence input and all-atom protein labels in atom37. Labels atom37_positions: residue x 37 x 3 coordinates, with zeros for missing atoms. atom37_mask: residue x 37 resolved-atom mask. aatype, residue_index, auth_seq_id, insertion_code, residue_name, ca_mask.… See the full description on the dataset page: https://huggingface.co/datasets/Synthyra/PDB-Monomeric-Structure-ESMFold2.tabular100K<n<1M0 likes119 downloads3mo agoHugging Face03keiran-rowell /esmfold1-fp8-wasm0 likes107 downloads27d agoHugging Face04AI4Protein /DeepLocMulti_ESMFold DeepLocMulti Dataset with ESMFold Structural Sequence Description: Protein localization encompasses the processes that establish and maintain proteins at specific locations. Number of labels: 10 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence location: Specific location Github Simple, Efficient and Scalable Structure-aware Adapter… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepLocMulti_ESMFold.texttext-classification10K<n<100K0 likes102 downloads1y agoHugging Face05AI4Protein /MetalIonBinding_ESMFold MetalIonBinding Dataset with ESMFold Structural Sequence Description: Metal-binding proteins are proteins or protein domains that chelate a metal ion. Number of labels: 2 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence ss3_seq: DSSP 3 secondary structure sequence esm3_structure_seq: ESM3 structure sequence encoded by VQ-VAE Github… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/MetalIonBinding_ESMFold.texttext-classification1K<n<10K0 likes93 downloads1y agoHugging Face06AI4Protein /GO_MF_ESMFold GO-MF Dataset with ESMFold Structural Sequence Description: Molecular Function of Gene Ontology (GO) project. Number of labels: 489 Problem Type: multi_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/GO_MF_ESMFold.texttext-classification10K<n<100K0 likes87 downloads1y agoHugging Face07AI4Protein /GO_BP_ESMFold GO-BP Dataset with ESMFold Structural Sequence Description: Biological Process of Gene Ontology (GO) project. Number of labels: 1943 Problem Type: multi_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/GO_BP_ESMFold.texttext-classification10K<n<100K0 likes84 downloads1y agoHugging Face08AI4Protein /Thermostability_ESMFold Thermostability Dataset with ESMFold Structural Sequence Description: In materials science and molecular biology, thermostability is the ability of a substance to resist irreversible change in its chemical or physical structure, often by resisting decomposition or polymerization, at a high relative temperature. Number of labels: 1 Problem Type: regression Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability_ESMFold.tabulartext-classification1K<n<10K0 likes83 downloads1y agoHugging Face09AI4Protein /GO_CC_ESMFold GO-CC Dataset with ESMFold Structural Sequence Description: Cellular Component of Gene Ontology (GO) project. Number of labels: 320 Problem Type: multi_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/GO_CC_ESMFold.texttext-classification10K<n<100K0 likes66 downloads1y agoHugging Face10sgetttt /esmfold2-assets LevinHarness/esmfold2-assets — internal asset cache This private dataset is an internal staging cache of third-party runtime assets required by the Levin Harness plugin(s) listed below. It is not an official distribution: nothing here is published under this account's own terms, and it is not affiliated with or endorsed by any upstream project. Ownership and licensing Every file remains the property of its upstream authors. Each file keeps its upstream license… See the full description on the dataset page: https://huggingface.co/datasets/sgetttt/esmfold2-assets.0 likes60 downloads11d agoHugging Face11AI4Protein /DeepLocBinary_ESMFold DeepLocBinary Dataset with ESMFold Structural Sequence Description: Protein localization encompasses the processes that establish and maintain proteins at specific locations. Number of labels: 2 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence location: On the membrane or not Github Simple, Efficient and Scalable Structure-aware… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepLocBinary_ESMFold.texttext-classification1K<n<10K0 likes57 downloads1y agoHugging Face12AI4Protein /DeepSol_ESMFold DeepSol Dataset with ESMFold Structural Sequence Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis. Number of labels: 2 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepSol_ESMFold.tabulartext-classification10K<n<100K1 likes53 downloads1y agoHugging Face13AI4Protein /EC_ESMFold EC Dataset with ESMFold Structural Sequence Description: The Enzyme Commission number (EC number) is a numerical classification scheme for enzymes, based on the chemical reactions they catalyze. Number of labels: 585 Problem Type: multi_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/EC_ESMFold.texttext-classification10K<n<100K0 likes49 downloads1y agoHugging Face14AI4Protein /ProtSolM_ESMFold_PDB ProtSolM PDB Dataset (PDBSol) Github ProtSolM: Protein Solubility Prediction with Multi-modal Features https://github.com/tyang816/ProtSolM VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please cite our work if you use our dataset. @inproceedings{tan2024protsolm, title={Protsolm: Protein solubility prediction with multi-modal features}, author={Tan… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/ProtSolM_ESMFold_PDB.text-classification0 likes43 downloads1y agoHugging Face15AI4Protein /DeepSol_ESMFold_PDB DeepSol PDB Dataset Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please cite our work if you use our dataset. @article{tan2024ses-adapter, title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts Protein… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepSol_ESMFold_PDB.text-classification0 likes35 downloads1y agoHugging Face16AI4Protein /ProtSolM_ESMFold ProtSolM PDB Dataset (PDBSol) Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis. Number of labels: 2 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence detail: meta information Github ProtSolM: Protein Solubility Prediction with Multi-modal Features https://github.com/tyang816/ProtSolM VenusFactory: A Unified Platform for Protein Engineering Data Retrieval… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/ProtSolM_ESMFold.tabulartext-classification10K<n<100K0 likes34 downloads1y agoHugging Face17AI4Protein /GO_ESMFold_PDB GO PDB Dataset Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please cite our work if you use our dataset. @article{tan2024ses-adapter, title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts Protein Language… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/GO_ESMFold_PDB.text-classification0 likes29 downloads1y agoHugging Face18AI4Protein /DeepSoluE_ESMFold DeepSoluE Dataset with ESMFold Structural Sequence Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis. Number of labels: 2 Problem Type: single_label_classification Columns: aa_seq: protein amino acid sequence foldseek_seq: foldseek 20 3di structural sequence ss8_seq: DSSP 8 secondary structure sequence Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepSoluE_ESMFold.tabulartext-classification10K<n<100K0 likes26 downloads1y agoHugging Face19AI4Protein /Thermostability_ESMFold_PDB Thermostability PDB Dataset Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please cite our work if you use our dataset. @article{tan2024ses-adapter, title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability_ESMFold_PDB.text-classification0 likes26 downloads1y agoHugging Face20AI4Protein /DeepSoluE_ESMFold_PDB DeepSolE PDB Dataset Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please cite our work if you use our dataset. @article{tan2024ses-adapter, title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts Protein… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepSoluE_ESMFold_PDB.text-classification0 likes24 downloads1y agoHugging Face21AI4Protein /DeepLocMulti_ESMFold_PDB DeepLocMulti PDB Dataset Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please cite our work if you use our dataset. @article{tan2024ses-adapter, title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepLocMulti_ESMFold_PDB.text-classification0 likes24 downloads1y agoHugging Face22AI4Protein /DeepLocBinary_ESMFold_PDB DeepLocBinary PDB Dataset Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter Citation Please cite our work if you use our dataset. @article{tan2024ses-adapter, title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts Protein Language Models}, author={Tan, Yang and Li, Mingchen and Zhou, Bingxin and Zhong, Bozitao and Zheng, Lirong and Tan, Pan and Zhou, Ziyi and… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepLocBinary_ESMFold_PDB.text-classification0 likes24 downloads2y agoHugging Face23AI4Protein /DeepET_Topt_ESMFold DeepET_Topt Dataset Description: protein optimum temperature. Number of labels: 1 Problem Type: regression Columns: aa_seq: protein amino acid sequence ss8_seq: DSSP 8 secondary structure sequence foldseek_seq: foldseek 20 3di structural sequence ss3_seq: DSSP 3 secondary structure sequence Github VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepET_Topt_ESMFold.tabulartext-classification1K<n<10K0 likes24 downloads1y agoHugging Face24AI4Protein /eSOL_ESMFold_PDB Github VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please cite our work if you use our dataset. @article{tan2025venusfactory, title={VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning}, author={Tan, Yang and Liu, Chen and Gao, Jingyuan and Wu, Banghao and Li, Mingchen and Wang, Ruilin and Zhang, Lingrong and… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/eSOL_ESMFold_PDB.0 likes24 downloads1y agoHugging Face25AI4Protein /MetalIonBinding_ESMFold_PDB MetalIonBinding PDB Dataset Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please cite our work if you use our dataset. @article{tan2024ses-adapter, title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/MetalIonBinding_ESMFold_PDB.text-classification0 likes23 downloads1y agoHugging Face26AI4Protein /EC_ESMFold_PDB EC PDB Dataset Github Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models https://github.com/tyang816/SES-Adapter VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please cite our work if you use our dataset. @article{tan2024ses-adapter, title={Simple, Efficient, and Scalable Structure-Aware Adapter Boosts Protein Language… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/EC_ESMFold_PDB.text-classification0 likes23 downloads1y agoHugging Face27AI4Protein /DeepET_Topt_ESMFold_PDB Github VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning https://github.com/ai4protein/VenusFactory Citation Please cite our work if you use our dataset. @article{tan2025venusfactory, title={VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning}, author={Tan, Yang and Liu, Chen and Gao, Jingyuan and Wu, Banghao and Li, Mingchen and Wang, Ruilin and Zhang, Lingrong and… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepET_Topt_ESMFold_PDB.0 likes23 downloads1y agoHugging Face28yk0 /proteinbase-esmfold2fast proteinbase ESMFold2-Fast Structure Predictions This dataset contains ESMFold2-Fast binder-target complex predictions. Each prediction includes: complex.cif pae.npy metrics.json The top-level manifest.csv maps each prediction to the tar shard and stores pLDDT, pTM, iPTM, label metadata, and relative paths inside the archive. Summary: predictions included: 10890 predictions excluded during packaging: 90 seeds: 1, 2, 3, 4, 5 Download with: hf download… See the full description on the dataset page: https://huggingface.co/datasets/yk0/proteinbase-esmfold2fast.10K<n<100K0 likes15 downloads4mo agoHugging Face29yk0 /litscrape-esmfold2fast litscrape ESMFold2-Fast Structure Predictions This dataset contains ESMFold2-Fast binder-target complex predictions. Each prediction includes: complex.cif pae.npy metrics.json The top-level manifest.csv maps each prediction to the tar shard and stores pLDDT, pTM, iPTM, label metadata, and relative paths inside the archive. Summary: predictions included: 20100 predictions excluded during packaging: 0 seeds: 1, 2, 3, 4, 5 Download with: hf download… See the full description on the dataset page: https://huggingface.co/datasets/yk0/litscrape-esmfold2fast.10K<n<100K0 likes8 downloads4mo agoHugging Face30AI4Protein /VenusVaccine_BacteriaBinary_ESMFoldtext1K<n<10K0 likes7 downloads1y agoHugging Face

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