cell-segmentation
pseudo-nitzschia-cell-segmentation
Pseudo-nitzschia Cell Segmentation Dataset
Instance segmentation dataset for counting individual Pseudo-nitzschia cells in chain colonies imaged by the Imaging FlowCytobot (IFCB).
Dataset Description
Pseudo-nitzschia is a genus of harmful algal bloom (HAB) forming diatoms. Cells grow in stepped chains, making individual cell counting challenging. This dataset provides polygon annotations of individual cells within chain colonies, enabling automated cell counting via… See the full description on the dataset page: https://huggingface.co/datasets/patcdaniel/pseudo-nitzschia-cell-segmentation.CellSegmentationCocoAnnotationCellSegmentationMMsample_cell_segmentationlive-cell-segmentation-dataset
Light-microscopy cell segmentation dataset
Transmitted-light fields -- phase contrast, brightfield, DIC and quantitative phase -- with
uint16 instance masks, from 14 public datasets, curated for spaCR and used to fine-tune
live-cell-segmentation-cpsam.
11,007 fields: 6,778 train, 2,030 valid,
2,199 test. Split by ACQUISITION -- a well, a dish, a time-lapse or a
z-stack is never divided between sets -- so the test set is fields the model never saw
anything of.
Layout… See the full description on the dataset page: https://huggingface.co/datasets/einarolafsson/live-cell-segmentation-dataset.