case-reports
case-reports
FindZebra case reports
A collection of 3344 case reports fetched from the PubMed API for the Fabry, Gaucher and Familial amyloid cardiomyopathy (FAC) diseases.
Articles are labelled using a text segmentation model described in "FindZebra online search delving into rare disease case reports using natural language processing".
pubmed_case_reports
PubMed Case Reports
A collection of 13,989 full-text case reports from the PubMed Central (PMC) Open Access subset, spanning 2005–2025. Each article includes structured metadata, abstract, full body text, and section-level annotations. This dataset is designed for medical NLP, clinical reasoning, and biomedical text mining.
Dataset Description
Summary
This dataset comprises case reports published in peer-reviewed medical journals, sourced from the… See the full description on the dataset page: https://huggingface.co/datasets/awinml/pubmed_case_reports.longCOVID_CaseReports_SDOHThis dataset contains text for over 7,000 case report sections in academic papers related to Post COVID-19 Condition (PCC), also known as Long COVID. It is comprised of three columns: 'Token,' 'entity_type,' and 'case_report_id.' There are over 3.4 million observations in total.
Entity types are presented in CoNLL format and relate to sociodemographic, behavioral and selected biomedical dimensions relevant to PCC. There are 27 core entity types (53 in CoNLL): ‘Access_To_Care,’ ‘Age,’… See the full description on the dataset page: https://huggingface.co/datasets/PCC-SDOH-NLP/longCOVID_CaseReports_SDOH.