TCGA
Datasets
All datasets matching “TCGA”tcga-wsi-uni2h-features
TCGA WSI UNI2H Features
Dataset Summary
This dataset provides tile-level UNI2-h embeddings extracted from TCGA whole-slide images (WSIs) using a reproducible, auditable pipeline designed for computational pathology research.
Data is organized by project (for example TCGA-HNSC) and currently exposes:
features/ containing H5 feature files with tile-level embeddings
vis/ containing overlay images for quality inspection and pipeline verification
[!IMPORTANT]
Unlike the… See the full description on the dataset page: https://huggingface.co/datasets/W8Yi/tcga-wsi-uni2h-features.Paladin_TCGA_CPTAC_omicsPaladin TCGA & CPTAC Spatial Omics Maps
Ready-to-use patch-level and slide-level spatial omics maps inferred by
Paladin from TCGA and CPTAC
whole-slide images. The released .Paladin.h5 files can be analyzed directly
without rerunning WSI inference.
The collection is populated in stages. Check Files and versions for the
cohorts currently available.
Spatial multi-omics example
The panels show the H&E WSI, a reference tumor mask, CNV burden, TP53 CNV,
DNA-methylation… See the full description on the dataset page: https://huggingface.co/datasets/zhihuanglab/Paladin_TCGA_CPTAC_omics.tcga-brca-titan-idc-ilc
tcga-brca-titan-idc-ilc
1. Tổng quan
[CẦN ĐIỀN THỦ CÔNG: mục đích, ngữ cảnh tạo dataset]
Tổng số bản ghi (cộng tất cả manifest phát hiện được): 4228
Số manifest phát hiện được trong bộ nhớ: 3 (df, brca_df, full_df)
Repo HuggingFace: okbro1234/tcga-brca-titan-idc-ilc
2. Cấu trúc lưu trữ tại đích
/ # suy từ hàm `HfApi`
file.txt # suy từ hàm `HfApi`
lfs.bin # suy từ hàm `HfApi`
shard_{i}_of_5.bin # suy từ hàm `HfApi`
remote/file/path.h5 #… See the full description on the dataset page: https://huggingface.co/datasets/okbro1234/tcga-brca-titan-idc-ilc.tcgaTCGA-PANCAN-HiSeq-2770x20530gene expression cancer RNA-Seq - Check the original submission: - https://www.synapse.org/Synapse:syn2812925 - is maintained by the cancer genome atlas pan-cancer analysis project. - TCGA-PANCAN-HiSeq-2770x20530
Files combined:
unc.edu_BRCA_IlluminaHiSeq_RNASeqV2.geneExp (20530, 957) BRCA
unc.edu_KIRC_IlluminaHiSeq_RNASeqV2.geneExp (20530, 552) KIRC
unc.edu_LUAD_IlluminaHiSeq_RNASeqV2.geneExp (20530, 413) LUAD
unc.edu_THCA_IlluminaHiSeq_RNASeqV2.geneExp (20530, 471) THCA… See the full description on the dataset page: https://huggingface.co/datasets/Fllamber/TCGA-PANCAN-HiSeq-2770x20530.TCGA-12K-parquet
TCGA-12K Parquet
Attribution
This dataset contains 224 x 224 JPEG patches from whole-slide images originally downloaded from The Cancer Genome Atlas (TCGA) that are available in the NCI Genomic Data Commons (GDC) Open Access tier. We mirror and repackage a commonly used ~12k WSI subset in parquet format for ease of training. We exclude patches that did not pass HSV thresholding, following the procedure in Kaiko.AI's Midnight paper. Patches were randomly sampled across… See the full description on the dataset page: https://huggingface.co/datasets/medarc/TCGA-12K-parquet.