PMC
Datasets
All datasets matching “PMC”3D-ADAMRepository for the 3D-ADAM (3D Anomaly Detection in Additive Manufacturing) Dataset. This is the raw data for our complete dataset, separated by part-instance to allow users to utilise the dataset as desired.
We provide a single-camera (using the MechMind-Nano) subset prepared for unsupervised training at anomaly detection, localisation and segementation tasks through the anomalib library in a separate repository: here
Our ArXiv paper can also be found here: 3D-ADAM Dataset
This project has… See the full description on the dataset page: https://huggingface.co/datasets/pmchard/3D-ADAM.PMC
Data collected from PMC
Only CC-BY, CC-BY-SA licenses are included.
For all records, check the jsonl files in the data folder
PMC-VQA
PMC-VQA Dataset
PMC-VQA Dataset
Daraset Structure
Sample
Dataset Structure
PMC-VQA (version-1: 227k VQA pairs of 149k images).
train.csv: metafile of train set
test.csv: metafile of test set
test_clean.csv: metafile of test clean set
images.zip: images folder
(update version-2: noncompound images).
train2.csv: metafile of train set
test2.csv: metafile of test set
images2.zip: images folder
Sample
A row in train.csv is shown bellow… See the full description on the dataset page: https://huggingface.co/datasets/RadGenome/PMC-VQA.open-pmc-18m
OPEN-PMC
Arxiv: Arxiv
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Code: Open-PMC Github
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Model Checkpoint: Hugging Face
Dataset Summary
This dataset consists of image-text pairs extracted from medical papers available on PubMed Central. It has been curated to support research in medical image understanding, particularly in natural language processing (NLP) and computer vision tasks related to medical imagery. The dataset includes:
Extracted images from research articles.… See the full description on the dataset page: https://huggingface.co/datasets/vector-institute/open-pmc-18m.pmc_oaFoundation models trained on large-scale dataset gain a recent surge in CV and NLP. In contrast, development in biomedical domain lags far behind due to data scarcity.
To address this issue, we build and release PMC-OA, a biomedical dataset with 1.6M image-caption pairs collected from PubMedCentral's OpenAccess subset, which is 8 times larger than before.
PMC-OA covers diverse modalities or diseases, with majority of the image-caption samples aligned at finer-grained level, i.e., subfigure and subcaption.
While pretraining a CLIP-style model on PMC-OA, our model named PMC-CLIP achieves state-of-the-art results on various downstream tasks,
including image-text retrieval on ROCO, MedMNIST image classification, Medical VQA, i.e. +8.1% R@10 on image-text retrieval, +3.9% accuracy on image classification.PMC-Treatment
🔭 Overview
R2MED: First Reasoning-Driven Medical Retrieval Benchmark
R2MED is a high-quality, high-resolution synthetic information retrieval (IR) dataset designed for medical scenarios. It contains 876 queries with three retrieval tasks, five medical scenarios, and twelve body systems.
Dataset
#Q
#D
Avg. Pos
Q-Len
D-Len
Biology
103
57359
3.6
115.2
83.6
Bioinformatics77
47473
2.9
273.8
150.5
Medical Sciences
88
34810
2.8
107.1
122.7
MedXpertQA-Exam
97… See the full description on the dataset page: https://huggingface.co/datasets/R2MED/PMC-Treatment.