AlphaFold2
EC_AlphaFold2
EC Dataset with AlphaFold2 Structural Sequence
Description: The Enzyme Commission number (EC number) is a numerical classification scheme for enzymes, based on the chemical reactions they catalyze.
Number of labels: 585
Problem Type: multi_label_classification
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary structure sequence
Github
Simple, Efficient and Scalable Structure-aware Adapter… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/EC_AlphaFold2.MetalIonBinding_AlphaFold2
MetalIonBinding Dataset with AlphaFold2 Structural Sequence
Description: Metal-binding proteins are proteins or protein domains that chelate a metal ion.
Number of labels: 2
Problem Type: single_label_classification
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary structure sequence
ss3_seq: DSSP 3 secondary structure sequence
esm3_structure_seq: ESM3 structure sequence encoded by VQ-VAE
Github… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/MetalIonBinding_AlphaFold2.Thermostability_AlphaFold2
Thermostability Dataset with AlphaFold2 Structural Sequence
Description: In materials science and molecular biology, thermostability is the ability of a substance to resist irreversible change in its chemical or physical structure, often by resisting decomposition or polymerization, at a high relative temperature.
Number of labels: 1
Problem Type: regression
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability_AlphaFold2.DeepLocBinary_AlphaFold2
DeepLocBinary Dataset with AlphaFold2 Structural Sequence
Description: Protein localization encompasses the processes that establish and maintain proteins at specific locations.
Number of labels: 2
Problem Type: single_label_classification
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary structure sequence
location: On the membrane or not
Github
Simple, Efficient and Scalable Structure-aware… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepLocBinary_AlphaFold2.GO_MF_AlphaFold2
GO-MF Dataset with AlphaFold2 Structural Sequence
Description: Molecular Function of Gene Ontology (GO) project.
Number of labels: 489
Problem Type: multi_label_classification
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary structure sequence
Github
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models
https://github.com/tyang816/SES-Adapter
VenusFactory: A Unified… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/GO_MF_AlphaFold2.GO_BP_AlphaFold2
GO-BP Dataset with AlphaFold2 Structural Sequence
Description: Biological Process of Gene Ontology (GO) project.
Number of labels: 1943
Problem Type: multi_label_classification
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary structure sequence
Github
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models
https://github.com/tyang816/SES-Adapter
VenusFactory: A… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/GO_BP_AlphaFold2.