Modelpublic

zhangtaolab/PlantHelixSeek-CRE

sourceHugging Facecc-by-nc-4.0updated 2mo agoView on Hugging Face

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Model Card

PlantHelixSeek-CRE

Fine-tuned from PlantHelixSeek for cis-regulatory element (CRE) prediction — binary classification of open-chromatin / CRE regions.

Task

—Type: Sequence classification (binary)
—Base model: PlantHelixSeek (470M)

Usage

python

from transformers import AutoModelForSequenceClassification, AutoTokenizer

model = AutoModelForSequenceClassification.from_pretrained(
    "zhangtaolab/PlantHelixSeek-CRE", trust_remote_code=True
)
tokenizer = AutoTokenizer.from_pretrained(
    "zhangtaolab/PlantHelixSeek-CRE", trust_remote_code=True
)

Full genome-wide CRE prediction + peak calling pipeline: see `scripts/cis_regulatory/`.

License

CC-BY-NC 4.0