vadimbelsky/qwen3.5-medical-ft-stage3-dpo

Qwen3.5-9B Medical Triage — Stage 3 DPO (v4)

Emergency department triage model fine-tuned on Qwen3.5-9B via a 3-stage pipeline: Stage 1 (general medical SFT) → Stage 2 (ED intake SOAP → ESI decision SFT) → Stage 3 (DPO alignment to reduce over-triage, this model).

Quantized to Q4_K_M GGUF for on-device inference.

Model Description

Given an ED SOAP intake note, the model outputs a structured triage decision:

• —ESI level (1–5) with justification
• —Key clinical findings
• —Time-to-provider target
• —Immediate interventions required

ESI Scale: 1 = Immediate life threat · 2 = Emergent high-risk · 3 = Urgent stable · 4 = Less urgent · 5 = Non-urgent

Training Pipeline

Stage 3 DPO Details

• —Base: Stage 2 LoRA checkpoint (vadimbelsky/qwen3.5-medical-ft-stage2)
• —Dataset: dpo_dataset_v4.jsonl — 5,413 raw pairs → 7,789 weighted pairs
• —Loss: Combined apo_down × 0.3 + sft × 1.0 (MPO-style)
• —Beta: 0.5 · LR: 5e-5 · Epochs: 0.1 (47 steps)
• —Batch: 2 × 8 gradient accumulation = effective 16
• —ESI label prepending: All chosen/rejected completions prefixed with explicit ESI label (e.g. ESI 2 — Emergent (high risk)\n\n...) to anchor preference signal at token position 0

Dataset Sources (v4)

Evaluation Results

Evaluated on MIMIC-IV-Ext Triage Instruction Corpus (MIETIC) — 36 human-expert validated RETAIN cases.

v4 vs Previous Stages

v4 Detailed Results (MIETIC, n=36)

Samples evaluated   : 36
ESI level parsed    : 36 / 36
Correct             : 27
Accuracy            : 75.0%
Under-triage rate   : 11.1% (4 cases)
Over-triage rate    : 13.9% (5 cases)
High-risk recall    : 92.0% (ESI 1+2, n=25)

Per-ESI Accuracy:

Confusion Matrix (rows = ground truth, cols = predicted):

GT \ Pred  ESI 1  ESI 2  ESI 3  ESI 4  ESI 5
ESI 1         12      2      0      0      0
ESI 2          0      9      2      0      0
ESI 3          0      2      3      0      0
ESI 4          0      0      2      2      0
ESI 5          0      0      0      1      1

All remaining errors are ±1 ESI boundary confusions — no catastrophic mis-triage.

Key Lessons from DPO Iteration

• —v1–v3 failure: IPO/sigmoid loss collapsed when dataset direction was 100% anti-overtriage → catastrophic under-triage regression (40% high-risk recall at worst)
• —v4 fix: (1) ESI label prepended at token position 0 for unambiguous preference signal; (2) apo_down + sft combined loss preserves ESI 1/2 recall via SFT component; (3) Sources D (ESI 1/2 anchors ×3) + E (ESI 3 bidirectional ×2) balance dataset direction

Usage

# Requires llama.cpp server running with the Q4_K_M GGUF
# llama-server --model qwen3.5-medical-ft-stage3-dpo-q4km.gguf --port 8080 -c 4096

from openai import OpenAI
client = OpenAI(base_url="http://localhost:8080/v1", api_key="none")

SYSTEM_PROMPT = (
    "You are an expert emergency medicine triage nurse. "
    "Given a SOAP intake note, provide a structured triage decision including "
    "ESI level with justification, key clinical findings, time-to-provider target, "
    "and any immediate interventions required."
)

response = client.chat.completions.create(
    model="local",
    messages=[
        {"role": "system", "content": SYSTEM_PROMPT},
        {"role": "user", "content": "<SOAP intake note here>"},
    ],
    temperature=0.1,
    max_tokens=512,
)
print(response.choices[0].message.content)

Limitations & Safety

⚠️ This model is for research purposes only. It must NOT be used for clinical decision-making without licensed clinician oversight.

• —Evaluated on 36 MIETIC validation cases — not a clinical trial
• —11.1% under-triage rate means critical patients may be down-triaged
• —92% high-risk recall means ~8% of ESI 1/2 patients may be missed
• —Model has not been validated on real ED populations
• —Fine-tuned on synthetic + MIMIC-IV derived data only

Training Infrastructure

• —Hardware: NVIDIA GB10 (121 GB VRAM), 1 GPU
• —Framework: Unsloth 2026.3.4 + TRL DPOTrainer + Transformers 5.2.0
• —Training time: ~2 hours (47 steps)
• —Quantization: GGUF Q4KM via llama.cpp

Fine-tuned with [Unsloth](https://github.com/unslothai/unsloth) 🦥