rotsl/fungal-colony-pipeline

Add Downloads (all time), License, and DOI badges

Update citation with DOI

Add meta.yaml for Hub download counting

License → Apache 2.0, add HF API / gradio_client usage section with working examples

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Update README: add YAML metadata, switch docs to grayleafspot.pt smp model, add overlay/chart docs, fix all outdated sections

Update requirements: add smp and opencv

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Add opencv-python-headless to requirements

Update README: switch model docs from SAM-HQ to rotsl/grayleafspot-segmentation U-Net

Switch to rotsl/grayleafspot-segmentation U-Net model (best_area_w_0.7.pt), remove SAM-HQ dependency

Update requirements: replace transformers with huggingface_hub (no SAM-HQ needed)

Rewrite input.py: gallery+form pattern, no @gr.render, fields stay interactive

Add README with full documentation

Add requirements.txt

Add pipeline.py - Analysis engine

Add input.py - Metadata GUI

initial commit