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pyaging/cpgptgrimage3

sourceHugging Facemitupdated 1mo agoView on Hugging Face
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Model Card

cpgptgrimage3

CpGPTGrimAge3 implementation combining chronological age, GrimAge2 DNAm proxies, and CpGPT-predicted plasma-protein proxies in a Cox linear predictor that is calibrated to years.

Predictsbiological age, mortality risk
SpeciesHomo sapiens
Tissuewhole blood
Data typeDNA methylation
Model typeCox proportional hazards regression
Year2024

Use with pyaging

python
import pyaging as pya

pya.pred.predict_age(adata, ["cpgptgrimage3"])

Browse every clock in the pyaging Clock Catalogue.

Citation

de Lima Camillo, L. P., Sehgal, R., Armstrong, J., Higgins-Chen, A. T., Horvath, S., & Wang, B. CpGPT: a foundation model for DNA methylation. bioRxiv 2024.10.24.619766 (2024).

https://doi.org/10.1101/2024.10.24.619766