paolomanlapaz/rispice-750bp

RiSPICE LoRA Adapter (750 bp)

This repository provides the 750 bp LoRA adapter for RiSPICE (Rice SNP Prioritization Integrating Chromatin Effects), fine-tuned on top of [DNABERT-2-117M](https://huggingface.co/zhihan1996/DNABERT-2-117M) for multi-label prediction of rice chromatin features from DNA sequences.

Model Summary

• —Method: RiSPICE (Rice SNP Prioritization Integrating Chromatin Effects)
• —Base Model: paolomanlapaz/rispice-base
• —Adapter Type: PEFT / LoRA
• —Sequence Length: 750 bp
• —Task: Multi-label Chromatin Feature Prediction (num_labels=12)

Feature Order

The model outputs logits/probabilities corresponding to the following 12 chromatin features in exact order (Index 0 to 11):

Usage & Pipeline Code

For dataset preprocessing, model loading, and batch inference scripts, please refer to our GitHub repository: 🔗 [bioinfodlsu/rispice](https://github.com/bioinfodlsu/rispice)