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jruffle/tsne_samples_8d

sourceHugging Facemitupdated 9mo agoView on Hugging Face
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TSNE Model - samples mode - 8D

Pre-trained tsne model for transcriptomic data compression.

Details

  • —Mode: samples-centric compression
  • —Dimensions: 8
  • —Training data: TRACERx lung cancer transcriptomics
  • —Created: 2026-01-10T15:09:43.655940

Usage

python
import joblib
from huggingface_hub import snapshot_download

# Download model
local_dir = snapshot_download("jruffle/tsne_samples_8d")
model = joblib.load(f"{local_dir}/model.joblib")

# For classical models (PCA/UMAP):
# model contains: 'pca', 'umap', 'robust_scaler', 'gene_order'

# For TabPFN models (with UMAP reduction):
# model contains: 'tabpfn_embedding', 'umap_final', 'raw_embeddings', 'input_scaler', etc.
# Uses UMAP instead of PCA for non-linear dimension reduction of TabPFN embeddings