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ge8rgia/ChromBPNet-GH3-SOX2

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Model Card

Rat GH3 ChromBPNet Model

Description

ChromBPNet model trained on bulk ATAC-seq data from GH3 cells.

Files

—models/chrombpnet.h5 — Full ChromBPNet model
—models/chrombpnet_nobias.h5 — ChromBPNet model without bias correction
—models/bias_model_scaled.h5 — Scaled Tn5 bias model

Training Details

—Genome: mm10
—Cell type: GH3
—Data type: Bulk ATAC-seq
—Condition: SOX2 overexpression
—Bias model used: Tn5-bias-rn6-GH3/bias.h5
—Framework: ChromBPNet

Context

Part of a ChromBPNet atlas of rat pituitary cell types.

Bias correction was performed using the corresponding bias model: Pituitary ChromBPNet - Bias models

See the full atlas: Pituitary ChromBPNet - Bulk ATAC-seq Models