CoolFace
Modelpublic

ge8rgia/BPNet_ChIP-seq_SOX2

sourceHugging Facemitupdated 3mo agoView on Hugging Face
0likes
exp26_SOX2.bpnet.fit.json64 linesDownload Raw Back to root
1{2    "batch_size": 64,3    "controls": null,4    "count_output_bias": true,5    "device": "cuda",6    "dtype": "float32",7    "early_stopping": 5,8    "exclusion_lists": null,9    "in_window": 2114,10    "loci": [11        "/scratch/prj/stem_cells_pituitary/Bence/atacseq_chip_results/26/bwa/merged_library/macs2/narrow_peak/SOX2_REP1.mLb.clN_peaks.bed"12    ],13    "lr": 0.001,14    "max_counts": 99999999,15    "max_epochs": 20,16    "max_jitter": 128,17    "min_counts": 0,18    "n_filters": 64,19    "n_layers": 8,20    "name": "exp26_SOX2",21    "negative_ratio": 0.333,22    "negatives": [23        "/scratch/prj/stem_cells_pituitary/Bence/atacseq_chip_results/26/bwa/merged_library/macs2/narrow_peak/SOX2_negatives_bpnet.bed"24    ],25    "out_window": 1000,26    "performance_filename": "exp26_SOX2.performance.tsv",27    "profile_output_bias": true,28    "random_state": null,29    "reverse_complement": true,30    "reverse_complement_average": true,31    "scheduler": true,32    "sequences": "/scratch/prj/stem_cells_pituitary/Georgia/genome/mm10/mm10.fa",33    "signals": [34        "exp26_SOX2.bw"35    ],36    "skip": false,37    "summits": false,38    "training_chroms": [39        "chr2",40        "chr4",41        "chr5",42        "chr7",43        "chr9",44        "chr10",45        "chr11",46        "chr12",47        "chr13",48        "chr14",49        "chr15",50        "chr16",51        "chr17",52        "chr18",53        "chr19",54        "chr21",55        "chr22",56        "chrX",57        "chrY"58    ],59    "validation_chroms": [60        "chr8",61        "chr20"62    ],63    "verbose": true64}