ge8rgia/BPNet_ChIP-seq_SOX2
0
1{2 "batch_size": 64,3 "controls": null,4 "count_output_bias": true,5 "device": "cuda",6 "dtype": "float32",7 "early_stopping": 5,8 "exclusion_lists": null,9 "in_window": 2114,10 "loci": [11 "/scratch/prj/stem_cells_pituitary/Bence/atacseq_chip_results/26/bwa/merged_library/macs2/narrow_peak/SOX2_REP1.mLb.clN_peaks.bed"12 ],13 "lr": 0.001,14 "max_counts": 99999999,15 "max_epochs": 20,16 "max_jitter": 128,17 "min_counts": 0,18 "n_filters": 64,19 "n_layers": 8,20 "name": "exp26_SOX2",21 "negative_ratio": 0.333,22 "negatives": [23 "/scratch/prj/stem_cells_pituitary/Bence/atacseq_chip_results/26/bwa/merged_library/macs2/narrow_peak/SOX2_negatives_bpnet.bed"24 ],25 "out_window": 1000,26 "performance_filename": "exp26_SOX2.performance.tsv",27 "profile_output_bias": true,28 "random_state": null,29 "reverse_complement": true,30 "reverse_complement_average": true,31 "scheduler": true,32 "sequences": "/scratch/prj/stem_cells_pituitary/Georgia/genome/mm10/mm10.fa",33 "signals": [34 "exp26_SOX2.bw"35 ],36 "skip": false,37 "summits": false,38 "training_chroms": [39 "chr2",40 "chr4",41 "chr5",42 "chr7",43 "chr9",44 "chr10",45 "chr11",46 "chr12",47 "chr13",48 "chr14",49 "chr15",50 "chr16",51 "chr17",52 "chr18",53 "chr19",54 "chr21",55 "chr22",56 "chrX",57 "chrY"58 ],59 "validation_chroms": [60 "chr8",61 "chr20"62 ],63 "verbose": true64}