abnuel/MedGemma-4b-ICD

MedGemma-4b-ICD

Fine-tuned version of google/medgemma-4b-it for automated ICD medical coding from clinical text. Given a clinical note or diagnosis description, this model generates the corresponding ICD-10 code(s).

🚀 Live Demo: spaces/abnuel/med-coding

Model Description

ICD (International Classification of Diseases) coding is a critical but labor-intensive clinical workflow. This model was fine-tuned using supervised fine-tuning (SFT) with TRL on a curated dataset of clinical text paired with ICD-10 codes, enabling automated code suggestion from free-text diagnoses and clinical documentation.

• —Base model: google/medgemma-4b-it
• —Fine-tuning method: SFT (Supervised Fine-Tuning) via TRL
• —Task: ICD-10 code generation from clinical text
• —Domain: Clinical NLP / Healthcare AI

Intended Uses

• —Assisting medical coders with ICD-10 code lookup from clinical notes
• —Supporting clinical decision support systems
• —Research into automated medical coding pipelines

How to Use

from transformers import AutoTokenizer, AutoModelForCausalLM
import torch

model_id = "abnuel/MedGemma-4b-ICD"

tokenizer = AutoTokenizer.from_pretrained(model_id)
model = AutoModelForCausalLM.from_pretrained(
    model_id,
    torch_dtype=torch.bfloat16,
    device_map="auto"
)

prompt = "Patient presents with type 2 diabetes mellitus with diabetic chronic kidney disease, stage 3."
inputs = tokenizer(prompt, return_tensors="pt").to(model.device)

outputs = model.generate(**inputs, max_new_tokens=64)
print(tokenizer.decode(outputs[0], skip_special_tokens=True))

Training Details

• —Fine-tuning framework: TRL (Transformer Reinforcement Learning)
• —Method: Supervised Fine-Tuning (SFT)
• —Hardware: GPU (CUDA)
• —Base model license: Gemma terms of use

Limitations

• —Performance may vary on clinical notes with uncommon or highly specialized terminology.
• —Should not be used as a sole source of truth for billing or clinical decision-making without human review.
• —Trained on a specific dataset; generalization to all ICD-10 editions and specialties has not been fully evaluated.

Related Models & Resources

• —abnuel/MedGemma-4b-ICD-Coder — companion model checkpoint
• —abnuel/fine-tuned-openbiollm-medical-coding — Llama3-OpenBioLLM-8B fine-tuned on the same task

Citation

If you use this model in your research, please cite:

@misc{adegunlehin2025medgemma-icd,
  author = {Abayomi Adegunlehin},
  title  = {MedGemma-4b-ICD: Fine-tuned MedGemma for ICD-10 Medical Coding},
  year   = {2025},
  url    = {https://huggingface.co/abnuel/MedGemma-4b-ICD}
}