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KapoorLabs-Copenhagen/xenopus-stardist3d-nuclei-mari

sourceHugging Facebsd-3-clauseupdated 5mo agoView on Hugging Face

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nucleixenopusmari

Pretrained model from the VollSeg Xenopus zoo. Originally trained for the Tolonen / Sedzinski Xenopus tissue segmentation pipeline; now distributed under the BSD-3-Clause license for general use.

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python

from vollseg import ensure_model

# Downloads weights from KapoorLabs-Copenhagen/xenopus-stardist3d-nuclei-mari into <model_dir>/nuclei_xenopus_mari/
ensure_model("./Mari_Models/<subfolder>", "nuclei_xenopus_mari")

See https://github.com/Kapoorlabs-CAPED/KapoorLabs-VollSeg for the full segmentation pipeline.