EMBO/SourceData_NER_v1_0_0_BioLinkBERT_base

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SourceDataNERv100BioLinkBERTbase

This model is a fine-tuned version of michiyasunaga/BioLinkBERT-base on the source_data dataset. It achieves the following results on the evaluation set:

• —Loss: 0.1369
• —Accuracy Score: 0.9565
• —Precision: 0.8159
• —Recall: 0.8538
• —F1: 0.8344

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

• —learning_rate: 0.0001
• —trainbatchsize: 64
• —evalbatchsize: 128
• —seed: 42
• —optimizer: Use adafactor and the args are: No additional optimizer arguments
• —lrschedulertype: linear
• —num_epochs: 2.0

Training results

Framework versions

• —Transformers 4.46.3
• —Pytorch 1.13.1+cu117
• —Datasets 3.1.0
• —Tokenizers 0.20.3