datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
bacbench-ppi-stringdb-protein-sequences
Dataset for protein-protein interaction prediction across bacteria (Protein sequences)
A dataset of 10,533 bacterial genomes across 6,956 species with protein-protein interaction (PPI) scores for each genome.
The genome protein sequences and PPI scores have been extracted from STRING DB.
Each row contains a set of protein sequences from a genome, ordered by their location on the chromosome and plasmids and a set of associated PPI scores.
The PPI scores have been extracted using the… See the full description on the dataset page: https://huggingface.co/datasets/macwiatrak/bacbench-ppi-stringdb-protein-sequences.StringDBSeqsv12All the IDs and sequences in StringDB version 12
https://string-db.org/cgi/download
bacbench-ppi-stringdb-protein-sequences-small
Dataset for protein-protein interaction prediction across bacteria (Protein sequences)
A dataset of 261 bacterial genomes across 215 genera with protein-protein interaction (PPI) scores for each genome.
The genome protein sequences and PPI scores have been extracted from STRING DB.
Each row contains a set of protein sequences from a genome, ordered by their location on the chromosome and plasmids and a set of associated PPI scores.
The PPI scores have been extracted using the… See the full description on the dataset page: https://huggingface.co/datasets/macwiatrak/bacbench-ppi-stringdb-protein-sequences-small.bacbench-ppi-stringdb-dna-small
Dataset for protein-protein interaction prediction across bacteria (DNA)
A dataset of 261 bacterial genomes across 215 genera with protein-protein interaction (PPI) scores for each genome.
The genomes' PPI scores have been extracted from STRING DB and their associated DNA from GenBank (https://www.ncbi.nlm.nih.gov/genbank/).
Each row contains a set of DNA sequences from a genome, and a set of associated PPI scores.
The PPI scores have been extracted using the combined score… See the full description on the dataset page: https://huggingface.co/datasets/macwiatrak/bacbench-ppi-stringdb-dna-small.stringdb