datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
protein_stability_single_mutation
Protein Data Stability - Single Mutation
This repository contains data on the change in protein stability with a single mutation.
Attribution of Data Sources
Primary Source: Tsuboyama, K., Dauparas, J., Chen, J. et al. Mega-scale experimental analysis of protein folding stability in biology and design. Nature 620, 434–444 (2023). Link to the paper
Dataset Link: Zenodo Record
As to where the dataset comes from in this broader work, the relevant dataset (#3) is shown in… See the full description on the dataset page: https://huggingface.co/datasets/Trelis/protein_stability_single_mutation.africa-synth-cancer-breast-cancer-mutations-all
Africa Synth Cancer Breast Cancer Mutations All | Africa (Electric Sheep Africa metadata inventory)
Size category: 10K<n<100K - Formats: not declared - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset Covers… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-synth-cancer-breast-cancer-mutations-all.uof-unicode-mutation-graphs
UOF Unicode Mutation Graphs v2
Synthetic Unicode mutation cases with explicit code-point, normalization, bidirectional-class, general-category, identifier, printability, and action evidence.
Each example starts from a generated root string and applies one named mutation operation. The row keeps the escaped input, code points, Unicode properties, normalization deltas, evidence list, recommended action, and structured target together.
Release contract
Generator:… See the full description on the dataset page: https://huggingface.co/datasets/NewSonnet/uof-unicode-mutation-graphs.deepparse_address_mutations_comb_3
DeepParse Address Mutations (up to 3 mutations)
This dataset, deepparse_address_mutations_comb_3, provides a robust collection of address mutations designed to improve address matching tasks derived from the Deepparse Address Dataset. The dataset was generated using combinations of mutators applied to 100,000 annotated addresses, creating variations that simulate real-world inconsistencies, typos, and formatting differences.
Dataset Details
Mutation… See the full description on the dataset page: https://huggingface.co/datasets/jarredparrett/deepparse_address_mutations_comb_3.quiver_mutation_equivalence
Mutation Equivalence of Quivers
Quivers and quiver mutations are central to the combinatorial study of cluster algebras,
algebraic structures with connections to Poisson Geometry, string theory, and
Teichmuller theory. Quivers are directed (multi)graphs, and a quiver mutation
is a local transformation centered at a chosen node of the graph that involves
adding, deleting, and reversing the orientation of specific edges based on
a set of combinatorial rules. A fundamental open… See the full description on the dataset page: https://huggingface.co/datasets/ACDRepo/quiver_mutation_equivalence.Mutation_effect_dataset**Repository: https://ftp.ebi.ac.uk/pub/databases/intact/current/various/mutations.tsv
**Reference: Kerrien, S. et al. The IntAct molecular interaction database in 2012. Nucleic Acids Research 40, D841–D846 (2012).
africa-synth-cancer-brca-african-mutations-all
Africa Synth Cancer Brca African Mutations All | Africa (Electric Sheep Africa metadata inventory)
Size category: 10K<n<100K - Formats: not declared - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset Covers… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-synth-cancer-brca-african-mutations-all.africa-synth-population-ovarian-somatic-mutations-somalia
Africa Synth Population Ovarian Somatic Mutations Somalia | Africa (Electric Sheep Africa metadata inventory)
Size category: 10K<n<100K - Formats: parquet - Sector: health - Engineered by Electric Sheep Africa
TL;DR
This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context.
What This Dataset Covers… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-synth-population-ovarian-somatic-mutations-somalia.pubtator3_mutationsomni-dna-sad-mutation-dataset
Omni-DNA SAD Mutation Dataset
Synthetic and real DNA mutation pairs for training cross-domain HGT mutation prediction models.
Files
File
Pairs
Source
synthetic_expanded.jsonl
8,112
ICI dual-model generation (Omni + HyenaDNA consensus)
train.jsonl
3,317
Real NCBI sequences
test.jsonl
826
Real NCBI sequences (held-out)
Format
Each line is a JSON object:
{"parent": "ATGGCT...", "child": "ATAGCT..."}
Generation Method (Synthetic… See the full description on the dataset page: https://huggingface.co/datasets/Nhoodie/omni-dna-sad-mutation-dataset.protein-mutation-stability-instability-v0.1
protein-mutation-stability-instability-v0.1
What this dataset does
This dataset evaluates whether models can detect protein instability caused by mutation effects.
Each row represents a simplified mutation scenario described through structural and interaction proxies.
The task is to determine whether the mutation is likely to destabilize the protein.
Core stability idea
Mutation instability does not depend on mutation severity alone.
A mutation may be tolerated… See the full description on the dataset page: https://huggingface.co/datasets/ClarusC64/protein-mutation-stability-instability-v0.1.Linker-Mutationhgt-real-mutation-pairs
HGT Real Mutation Pairs
Real mutation pairs across 8 taxonomic domains for cross-domain horizontal gene transfer (HGT) mutation prediction.
Dataset Details
Split
Pairs
Mean mutation rate
Mean distance
train
3,317
~4.2%
~6 nt
test
826
~1.2%
2.2 nt
Domains
Domain
Sequences
Rationale
Archaea
1,260
Thermophile/halophile HGT
Bacteria
630
Primary HGT domain
Lichenes_HGT
210
Inter-kingdom HGT (fungi↔algae)
Metazoa
1,680
Microbiome… See the full description on the dataset page: https://huggingface.co/datasets/Nhoodie/hgt-real-mutation-pairs.prot_deep_mutational_scans
Protein Deep Mutational Scans
This dataset contains protein deep mutational scans (n=21010) from Adkar et al. 2012, Firnberg et al. 2014, Jacquier et al. 2013, Kelsic et al. 2016, Tsuboyama et al. 2023, and Weeks et al. 2023.
from datasets import Dataset, Features, Value
features = Features({
'species': Value('string'),
'annotation': Value('string'),
'sequence': Value('string'),
'value': Value('float32')
})
dataset = load_dataset("wanglab/prot_deep_mutational_scans"… See the full description on the dataset page: https://huggingface.co/datasets/wanglab/prot_deep_mutational_scans.dna_deep_mutational_scans
DNA Deep Mutational Scans
This dataset contains DNA deep mutational scans (n=40242) from Adkar et al. 2012, Firnberg et al. 2014, Jacquier et al. 2013, Kelsic et al. 2016, Tsuboyama et al. 2023, and Weeks et al. 2023.
from datasets import Dataset, Features, Value
features = Features({
'species': Value('string'),
'annotation': Value('string'),
'sequence': Value('string'),
'value': Value('float32')
})
dataset = load_dataset("wanglab/dna_deep_mutational_scans"… See the full description on the dataset page: https://huggingface.co/datasets/wanglab/dna_deep_mutational_scans.depmap_mutation_cancer_typeppi_mutation_effectDataset of Human PPI examples with cross-species test examples. Details found here: https://www.nature.com/articles/s41467-025-64512-w
Originally from: https://huggingface.co/datasets/danliu1226/Mutation_effect_dataset
Please cite their work.
ABX-RM-014_dna_gyrase_mutation_cascade-v0.1ABX-RM-014 DNA Gyrase Mutation Cascade
Purpose
Detect staged gyrA then parC mutation accumulation under fluoroquinolone stress before MIC crosses a resistant cutoff.
Core pattern
stress_index high
gyrA_mut_frac rises first
parC_mut_frac follows
MIC stays below resistant_mic_cutoff_mg_L during early cascade
later MIC crosses resistant_mic_cutoff_mg_L
Files
data/train.csv
data/test.csv
scorer.py
Schema
Each row is one timepoint in a within strain series.
Required columns
row_id
series_id… See the full description on the dataset page: https://huggingface.co/datasets/ClarusC64/ABX-RM-014_dna_gyrase_mutation_cascade-v0.1.splunk_mutation_50kIdentification_of_Somatic_Driver_Mutations_in_Indian_Oral_OSCC
Indian OSCC Somatic Driver Mutation Dataset
This repository contains the processed datasets used in the study: "Identification of Somatic Driver Mutations in Indian Oral Squamous Cell Carcinoma Using XGBoost and Integrative Genomic Features".
Files
train_MAF.csv – Somatic mutation data used for training
gene_variants.csv – Curated cancer driver gene list
ROH.csv – Runs of homozygosity intervals
SBS_Signature_HNSC.csv – Gene-level SBS13 annotation
synthetic_mutations.csv… See the full description on the dataset page: https://huggingface.co/datasets/aarushidas/Identification_of_Somatic_Driver_Mutations_in_Indian_Oral_OSCC.make-open-data-transactions-immobilieres-a-l-echelle-de-la-mutation-enrichies
Make Open Data - Transactions immobilières à l'échelle de la mutation enrichies
[!NOTE]
Ce jeu de données Hugging Face est vide. Cette carte sert seulement à référencer le jeu de données Make Open Data - Transactions immobilières à l'échelle de la mutation enrichies qui est disponible à l'adresse https://www.data.gouv.fr/datasets/66641d8106598652a7dfe70c
Description
Make Open Data est une initiative open source visant à faciliter la transformation des données… See the full description on the dataset page: https://huggingface.co/datasets/french-open-data/make-open-data-transactions-immobilieres-a-l-echelle-de-la-mutation-enrichies.GDC-QAG-genes-mutations
Dataset Card for uc-ctds/GDC-QAG-genes-mutations
This dataset contains genes and somatic mutations observed in various cancers. It is scraped from the /ssms endpoint in the Genomic Data Commons (GDC). This data is used to run the Query Augmented Generation (GDC) tool on the GDC. GDC QAG is currently deployed in the HuggingFace Spaces as a web app.
Dataset Details
Dataset Description
This dataset contains around 5.6 million somatic mutations (protein… See the full description on the dataset page: https://huggingface.co/datasets/uc-ctds/GDC-QAG-genes-mutations.demande-de-valeurs-foncieres-agregee-a-la-mutation-dvf
Demande de valeurs foncières agrégée à la mutation (DVF+)
Source
Source officielle : https://www.data.gouv.fr/datasets/demande-de-valeurs-foncieres-agregee-a-la-mutation-dvf
Identifiant du jeu de données data.gouv.fr : 615bce8666cb384cbbb0681a
Slug data.gouv.fr : demande-de-valeurs-foncieres-agregee-a-la-mutation-dvf
Licence indiquée dans les métadonnées data.gouv.fr : lov2
Structure Hugging Face
Un jeu de données data.gouv.fr = un dépôt Hugging… See the full description on the dataset page: https://huggingface.co/datasets/Data-Gouv-ML/demande-de-valeurs-foncieres-agregee-a-la-mutation-dvf.mutation_cancer_typeDRD2-mutationsAll possible mutations to a specific coding sequence of the human DRD2 gene, classified as missense or synonymous, PTVs are classed as missense.
Dataset can be used as a 1st pass evaluation of DNA language models, which should assign higher likelihoods/probabilities to synonymous mutations then to missense mutations.
mutation_dshumaneval_mutation_testold-donnees-de-laboratoires-pour-le-depistage-indicateurs-sur-les-mutations
OLD Données de laboratoires pour le dépistage : Indicateurs sur les mutations
Source
Source officielle : https://www.data.gouv.fr/datasets/old-donnees-de-laboratoires-pour-le-depistage-indicateurs-sur-les-mutations
Identifiant du jeu de données data.gouv.fr : 60dd8e92b9d32e9afdc23491
Slug data.gouv.fr : old-donnees-de-laboratoires-pour-le-depistage-indicateurs-sur-les-mutations
Licence indiquée dans les métadonnées data.gouv.fr : lov2
Structure… See the full description on the dataset page: https://huggingface.co/datasets/Data-Gouv-ML/old-donnees-de-laboratoires-pour-le-depistage-indicateurs-sur-les-mutations.inversion-mutation
Dataset Card for "inversion-mutation"
More Information needed
mutation-economique-technologique-et-sociale-des-services-avances-de-sante-la-personne-agee
[!NOTE]
Dataset origin: https://www.eesc.europa.eu/fr/our-work/publications-other-work/publications/mutation-economique-technologique-et-sociale-des-services-avances-de-sante-la-personne-agee
Description
Cette brochure examine les réalités socio-économiques du vieillissement en Europe, les défis et opportunités que cette nouvelle "silver economy" implique. Il s'agit entre autres de mesures statistiques couplées à une approche socio-sanitaire, des systèmes d'éducation et de… See the full description on the dataset page: https://huggingface.co/datasets/UE-CESE/mutation-economique-technologique-et-sociale-des-services-avances-de-sante-la-personne-agee.