datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
vad-multi-species
Positive Transfer Of The Whisper Speech Transformer To Human And Animal Voice Activity Detection
We proposed WhisperSeg, utilizing the Whisper Transformer pre-trained for Automatic Speech Recognition (ASR) for both human and animal Voice Activity Detection (VAD). For more details, please refer to our paper
Positive Transfer of the Whisper Speech Transformer to Human and Animal Voice Activity Detection
Nianlong Gu, Kanghwi Lee, Maris Basha, Sumit Kumar Ram, Guanghao You, Richard H.… See the full description on the dataset page: https://huggingface.co/datasets/nccratliri/vad-multi-species.nt_multispecies_1024plant-multi-species-genomesDataset made of diverse genomes available on NCBI and coming from 48 different species.
Test and validation are made of 2 species each. The rest of the genomes are used for training.
Default configuration "6kbp" yields chunks of 6.2kbp (100bp overlap on each side). The chunks of DNA are cleaned and processed so that
they can only contain the letters A, T, C, G and N.multi_species_genomesDataset made of diverse genomes available on NCBI and coming from ~850 different species.
Test and validation are made of 50 species each. The rest of the genomes are used for training.
Default configuration "6kbp" yields chunks of 6.2kbp (100bp overlap on each side). Similarly,
the "12kbp"configuration yields chunks of 12.2kbp. The chunks of DNA are cleaned and processed so that
they can only contain the letters A, T, C, G and N.nt_multispecies_4096nt_multispecies_1048576nt_multispecies_65536nt_multispecies_262144plant-multi-species-histone-modificationsThis is the fine-tune dataset for predicting three types of histone modification (H3K27ac, H3K27me3 and H3K4me3) in plants.
plant-multi-species-sequence-conservationThis is the fine-tune dataset for predicting sequence conservation in plants.
plant-multi-species-open-chromatinThis is the fine-tune dataset for predicting open chromatin in plants.
plant-multi-species-promoter-strengthThis is the fine-tune dataset for predicting promoter strength in two validation systems (tobacco leaves and maize protoplasts) in plants.
nt_multispecies_16384plant-multi-species-lncRNAsThis is the fine-tune dataset for predicting long non-coding RNAs (lncRNAs) in plants.
plant-multi-species-terminator-strengthplant-multi-species-core-promotersThis is the fine-tune dataset for predicting active core promoters in plants.
multi-species-8M-cleanedmulti-species-16M-cleanedmulti_species-pretokenized-NT150bp_multi_species_dataset
Dataset Card for "autotrain-data-species_classify"
More Information needed
omnimind-hic-multispecies
Hi-C Contact Maps for Multi-Species Topological Analysis
Description
This dataset contains real Hi-C chromatin conformation contact maps for 4 species, sourced from NCBI GEO. It was assembled to corroborate topological data analysis (TDA) performed on nucleotide-transformer genomic embeddings in the OmniMind Dodecatíad v3 publication pack.
Species and Provenance
Species
GEO Accession
Format
Resolution
Samples
Size
Escherichia coli… See the full description on the dataset page: https://huggingface.co/datasets/fabricioslv/omnimind-hic-multispecies.multi_genome_species_2klogan_multi_species_6kmulti-species-1M-cleaned-seed42multi_genome_species_1klogan_multi_species_12kmulti-species-benchmark
multi-species benchmark
Photographs where 2+ species appear in the same frame. Designed to evaluate
multi-label species identification and steering capabilities of biological
vision-language models. Two sources, unified into one parquet schema.
Sources
inat21_multilabel (299 rows, 147 images)
In-distribution: drawn from iNat21
validation images that already carry an iNat-supplied primary label. We use
InternVL3-AWQ to surface
images that also… See the full description on the dataset page: https://huggingface.co/datasets/dcher95/multi-species-benchmark.multi_species-pretokenized-NT-cachemulti-species-imagesThis is currently a test dataset and not meant to be used for any purpose.
logan_multi_species_1k