datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
TreeOfLife-200M
Dataset Card for TreeOfLife-200M
If you are looking for the original release TreeOfLife-200M dataset, as used in training BioCLIP 2 and presented the paper, please see Revision a8f38b4. The dataset, as presented here, was used to train BioCLIP 2.5 Huge; it completes the dataset cleaning process and resolves an issue where Observation.org occurrences were not included in the training data.
With 233 million images representing 933,798 taxa across the tree of life, TreeOfLife-200M… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/TreeOfLife-200M.fish-vista
Dataset Card for Fish-Visual Trait Analysis (Fish-Vista)
Note that the '</Use this dataset>' option will only load the CSV files. To download the entire dataset, including all processed images and segmentation annotations, refer to Instructions for downloading dataset and images.
See Example Code to Use the Segmentation Dataset
Figure 1. A schematic representation of the different tasks in Fish-Vista Dataset.
Instructions for downloading dataset… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/fish-vista.invasive_plants_hawaii
Dataset Card for Invasive Plants Project
This dataset is aimed at the image multi-classification and segmentation of various leaf damage types caused by biocontrol agents. The dataset contains images of both the dorsal and ventral side of Clidemia Hirta leaves, that were all collected in January 2025 near Hilo (Hawaii), in dirt trails along Steinback Highway. Clidemia Hirta is a highly invasive plant on the island of Hawaii (Big Island).
Dataset Configurations and… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/invasive_plants_hawaii.KABR-raw-videos
Dataset Card for KABR Raw Videos: Unprocessed Drone Footage for Kenyan Animal Behavior Analysis
Dataset Summary
This dataset contains the raw, unprocessed drone video footage collected during the creation of the KABR (Kenyan Animal Behavior Recognition) dataset.
Unlike the processed KABR mini-scene dataset which contains extracted video clips with behavioral annotations,
this collection provides the original full-frame drone videos captured at the Mpala Research… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/KABR-raw-videos.KABR-mini-scene-raw-videos
Dataset Card for Kenyan Animal Behavior Recognition (KABR) Mini-Scene Raw Videos
Dataset Summary
This dataset is comprised of a collection of 10+ hours of drone videos focused on Kenyan wildlife that contains behaviors of giraffes, plains zebras, and Grevy's zebras.
Animals can be identified with bounding box coordinates provided, and behavior annotations can be recovered by linking the labels back to these bounding boxes from the mini-scene annotations provided in our… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/KABR-mini-scene-raw-videos.TreeOfLife-10M
Dataset Card for TreeOfLife-10M
Dataset Summary
With over 10 million images covering 454 thousand taxa in the tree of life, TreeOfLife-10M is the largest-to-date ML-ready dataset of images of biological organisms paired with their associated taxonomic labels. It expands on the foundation established by existing high-quality datasets, such as iNat21 and BIOSCAN-1M, by further incorporating newly curated images from the Encyclopedia of Life (eol.org), which supplies most of… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/TreeOfLife-10M.2018-NEON-beetles
Dataset Card for 2018 NEON Ethanol-preserved Ground Beetles
Collection of ethanol-preserved ground beetles (family Carabidae) collected from various NEON sites in 2018 and photographed in batches in 2022. This dataset contains both group and individual specimen images (individuals segmented from the group images). Elytra measurements of the beetle specimens (taken on the images) are also provided.
Dataset Details
This dataset is composed of a collection of 577 images… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/2018-NEON-beetles.VLM4Bio
Dataset Card for VLM4Bio
Instructions for downloading the dataset
Install Git LFS
Git clone the VLM4Bio repository to download all metadata and associated files
Run the following commands in a terminal:
git clone https://huggingface.co/datasets/imageomics/VLM4Bio
cd VLM4Bio
Downloading and processing bird images
To download the bird images, run the following command:
bash download_bird_images.sh
This should download the bird images inside datasets/Bird/images… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/VLM4Bio.IDLE-OO-Camera-Traps
Dataset Card for IDLE-OO Camera Traps
IDLE-OO Camera Traps is a 5-dataset benchmark of camera trap images from the Labeled Information Library of Alexandria: Biology and Conservation (LILA BC) with a total of 2,586 images for species classification. Each of the 5 benchmarks is balanced to have the same number of images for each species within it (between 310 and 1120 images), representing between 16 and 39 species.
Supported Tasks and Leaderboards
Image… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/IDLE-OO-Camera-Traps.TreeOfLife-200M-Embeddings
TreeOfLife-200M Embeddings
Pre-computed image embeddings for all images from the TreeOfLife-200M dataset (revision 94bbc0b), sorted by taxonomic hierarchy for efficient filtered access.
This repository hosts embedding configs for TreeOfLife-200M. Each config corresponds to a different embedding model and/or precision. Currently available: BioCLIP 2 (float16) and BioCLIP 2.5 Huge (float16, L2-normalized). Additional configs will be added as new embeddings are generated.
We… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/TreeOfLife-200M-Embeddings.mmla_wilds
Dataset Card for MMLA The Wilds
Dataset Details
This dataset contains annotated video frames of giraffes, Grevy's zebras, Persian onagers, and African Painted Dogs, collected at The Wilds in Ohio. The dataset is intended for use in training and evaluating computer vision models for animal detection and classification from drone imagery. It includes frames from various sessions, with annotations indicating the presence of animals in the images in YOLO format, and is… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/mmla_wilds.KABR
Dataset Card for KABR: In-Situ Dataset for Kenyan Animal Behavior Recognition from Drone Videos
Dataset Summary
We present a novel high-quality dataset for animal behavior recognition from drone videos.
The dataset is focused on Kenyan wildlife and contains behaviors of giraffes, plains zebras, and Grevy's zebras.
The dataset consists of more than 10 hours of annotated videos, and it includes eight different classes, encompassing seven types of animal behavior and an… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/KABR.sentinel-beetles
Dataset Card for Beetles as Sentinel Taxa: Predicting drought conditions from NEON specimen imagery
This dataset contains images of pinned carabid beetle specimens collected by the National Ecological Observatory Network (NEON) from ecological sites across the U.S., along with associated metadata and drought severity indices (Standardized Precipitation Evapotranspiration Index (SPEI)). It was developed to for the second HDR ML Challenge, and is intended to support the development of… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/sentinel-beetles.rare-species
Dataset Card for Rare Species Dataset
Dataset Description
Repository: Imageomics/bioclip
Paper: BioCLIP: A Vision Foundation Model for the Tree of Life (arXiv)
Dataset Summary
This dataset was generated alongside TreeOfLife-10M; data (images and text) were pulled from Encyclopedia of Life (EOL) to generate a dataset consisting of rare species for zero-shot-classification and more refined image classification tasks. Here, we use "rare species" to mean species… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/rare-species.questFish2024
Dataset Card for QUEST Fish 2024
Images collected by teachers during a QUEST workshop. In 2024, the images were of fish collected from bodies of water near Princeton University.
Dataset Details
Dataset Structure
/dataset/
<folder>/
<img_id 1>.png
<img_id 2>.png
...
<img_id n>.png
...
<img_id 1>.png
<img_id 2>.png
...
<img_id n>.png
fieldData2024.csv
Data Instances… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/questFish2024.GZCD
Dataset Card for GZCD (Grevy's Zebra Census Dataset)
The GZCD (Grevy's Zebra Census Dataset) is an ecological computer vision dataset designed for wildlife detection, species classification, and individual animal re-identification (Re-ID). Captured entirely in the field, this dataset emphasizes endangered equid and ungulate populations, specifically Grevy's zebras, plains zebras, and reticulated giraffes.
GZCD consists of field photographs captured in Meru County, Kenya, taken… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/GZCD.phylo-fish
Dataset Card for Phylo-Fish
ML-ready dataset containing 38 species of Teleost fishes with an average number of 200 images per species. This semi-balanced subset was sourced from a larger fish image collection from the Great Lakes Invasives Network Project (GLIN)
Dataset Details
Teleost fish images from five ichthyological research collections that participated in the Great Lakes Invasives Network Project (GLIN) (original data source site: web archive link). After… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/phylo-fish.Heliconius-Collection_Cambridge-Butterfly
Dataset Card for Heliconius Collection (Cambridge Butterfly)
Dataset Description
Dataset Summary
Subset of the collection records from Chris Jiggins' research group at the University of Cambridge, collection covers nearly 20 years of field studies.
This subset contains approximately 36,189 RGB images of 11,962 specimens (29,134 images of 10,086 specimens across all Heliconius). Many records have both images and locality data.
Most images were… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/Heliconius-Collection_Cambridge-Butterfly.mmla_opc
Dataset Card for MMLA Ol Pejeta Conservancy
Dataset Details
This is a dataset containing annotated video frames of Plains zebras collected at the Ol Pejeta Conservancy (OPC) in Kenya using the semi-autonomous WildWing system. The dataset is intended for use in training and evaluating computer vision models for animal detection and classification from drone imagery. It includes frames from various sessions,
with annotations indicating the presence of zebras in the… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/mmla_opc.PUUM-koa-restoration-camera-trap-dataset
Dataset Card for Koa Associated Biodiversity Camera Trap Dataset
This dataset is aimed at classification of birds visiting planted Acacia koa (koa) trees in the Pu'u Maka'ala Natural Area Reserve (PUUM) on the island of Hawaii (Big Island). The dataset contains full and cropped images collected by camera trap. These images were collected from January 24th to February 25th, 2025.
Dataset Details
This dataset is aimed at classification of birds visiting planted Acacia… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/PUUM-koa-restoration-camera-trap-dataset.STRI-Samples
Dataset Card for Smithsonian Tropical Research Institute (STRI) Samples
Dataset Summary
Dorsal images of butterfly wings collected by Owen McMillan and members of his lab at the Smithsonian Tropical Research Institute.
Full dataset will be 24,119 RGB images: Dorsal and Ventral images of separated wings. This sample contains 207 dorsal butterfly images used as part of the training data for Imageomics/butterfly_detection_yolo.
Supported Tasks and… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/STRI-Samples.ToL-EDA
TreeOfLife-10M EDA Repo
This repo contains the real-time exploratory data analysis of the TreeOfLife-10M and Rare Species datasets during their creation and refinement. It is not intended for re-use as a dataset, but is shared in the spirit of open-science to provide further insight into the creation of the TreeOfLife-10M dataset and the Rare Species benchmark.
Dataset Details
Dataset Structure
As noted above, this dataset consists primarily of the… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/ToL-EDA.Hawaii-beetles
Dataset Card for Hawaii Beetles
Collection of ground beetle specimen images; specimens collected by the U.S. National Ecological Observatory Network (NEON) at the Pu'u Maka'ala Natural Area Reserve (PUUM) on the Island of Hawai'i (the Big Island). This collection includes both group images (by-tray) and the individual segmented individuals.
Dataset Details
Dataset Description
This dataset comprises 1,614 high-resolution PNG images of individual… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/Hawaii-beetles.thewilds_drones
Dataset Card for The Wilds Drones
This dataset contains drone mission data collected at The Wilds safari park in Ohio during Summer 2025.
Manual drone flights captured video footage of specific sites at The Wilds to support ecological monitoring, animal behavior analysis, and aerial object detection modeling.
Dataset Details
This dataset was created to support multimodal wildlife monitoring research using unmanned aerial vehicle (UAV) technology. Drone missions were… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/thewilds_drones.kabr-worked-examples
Dataset Card for KABR Worked Examples
This dataset is comprised of manually annotated bounding box detections, mini-scenes, behavior annotations, and associated telemetry
for three drone video sessions that were used for kabr-tools case studies. Drone video was collected at Mpala Research Centre in January 2023; please see the full video dataset for more information on original video context.
Dataset Details
Annotations were created to evaluate the kabr-tools… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/kabr-worked-examples.mmla_mpala
Dataset Card for mmla-mpala
Dataset Details
This is a dataset containing annotated video frames of giraffes, Grevy's zebras, and Plains zebras collected at the Mpala Research Center in Kenya. The dataset is intended for use in training and evaluating computer vision models for animal detection and classification from drone imagery.
The annotations indicate the presence of animals in the images in YOLO format. The dataset is designed to facilitate research in wildlife… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/mmla_mpala.BaboonLand
Dataset Card for BaboonLand Dataset: Tracking Primates in the Wild and Automating Behaviour Recognition from Drone Videos
Dataset Summary
BaboonLand is an aerial drone video dataset of wild olive baboons (Papio anubis) collected over 21 consecutive days in Laikipia (Mpala Research Centre), Kenya, following three troops during morning and evening movements to and from sleeping sites. The dataset contains UAV footage across diverse environments (e.g., sleeping tree, river… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/BaboonLand.thewilds_cameratraps
Dataset Card for The Wilds Camera Trap Data
This dataset contains images and video captured from camera traps deployed at The Wilds safari park in Ohio during Summer 2025. It supports ecological monitoring, animal behavior analysis, and biodiversity studies.
Dataset Details
This dataset was created to support wildlife monitoring research using camera traps. Data were collected using various camera trap models, with each camera recording photos and videos in the… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/thewilds_cameratraps.kabr-behavior-telemetry
Dataset Card for KABR Behavior Telemetry
Synchronized frame-level telemetry, detections, and behavior annotations from drone wildlife monitoring in Kenya, enabling research on animal behavior analysis and optimal drone survey protocols.
Dataset Details
This dataset provides frame-level integration of drone telemetry (GPS position, altitude, camera settings), animal detection bounding boxes, and expert-annotated behaviors from aerial wildlife monitoring in Kenyan… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/kabr-behavior-telemetry.mmla-pose
Dataset Card for MMLA Pose: Pose Orientation Labels for Zebras in MMLA Drone Footage
Cropped zebra images from MMLA drone footage, manually labeled with one of eight discrete pose orientations relative to the camera. The dataset was curated to train a pose / viewpoint classifier (DINOv2 backbone + MLP head) for the WildWing autonomous drone-navigation system, where knowing which side of an animal is visible drives both individual re-identification (matching against flank stripe… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/mmla-pose.