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Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.

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01longevity-db /aging-gene-expression-single-cell-mouse A single-cell transcriptomic atlas characterizes ageing tissues in the mouse https://www.nature.com/articles/s41586-020-2496-1#Sec2 Code to download and process this dataset is available in: https://github.com/seanome/2025-longevity-x-ai-hackathon Dataset structure is originally from AnnData. Descriptions of each data file is below. Data Files This dataset contains multiple parquet files, one for each sheet in the original Excel file:… See the full description on the dataset page: https://huggingface.co/datasets/longevity-db/aging-gene-expression-single-cell-mouse.tabular100K<n<1M0 likes2.3k downloads1y agoHugging Face02longevity-db /gene-expression-single-cell-mouse A single-cell transcriptomic atlas characterizes ageing tissues in the mouse Code to download and process this dataset is available in: https://github.com/seanome/2025-longevity-x-ai-hackathon Dataset structure is originally from AnnData. Descriptions of each data file is below. Data Files This dataset contains multiple parquet files, one for each sheet in the original Excel file: gene-expression-single-cell-mouse_*.parquet - Data files containing gene expression and… See the full description on the dataset page: https://huggingface.co/datasets/longevity-db/gene-expression-single-cell-mouse.10K<n<100K0 likes2.3k downloads1y agoHugging Face03gabrielaltay /tcga-gene-expression-quantification-open TCGA Gene Expression Quantification — Open Access Cohort-wide gene expression matrices for the open-access TCGA RNA-Seq data distributed by the NCI Genomic Data Commons. GDC serves these measurements one file per aliquot; here they are arranged as one row per sample, with each quantification carried as its own matrix over identical axes. GDC data release: Data Release 46.0 - August 10, 2026 Built: 2026-09-12 03:16:09 UTC Shape: 11,505 samples x 60,660 genes Projects: 33 Other… See the full description on the dataset page: https://huggingface.co/datasets/gabrielaltay/tcga-gene-expression-quantification-open.tabular100K<n<1M0 likes293 downloads10d agoHugging Face04bhargavi909 /Gene_expressions_UCI0 likes151 downloads3y agoHugging Face05VatsalPatel18 /gene-expression-tcga-cptac-survival-analysistabularn<1K0 likes131 downloads2y agoHugging Face06hu-lab /Gene_Expression_Predictiontext100K<n<1M0 likes113 downloads1y agoHugging Face07Merve-blt /TCGA-BRCA-Gene-Expression-Data0 likes108 downloads18d agoHugging Face08electricsheepafrica /africa-synth-population-tumor-gene-expression-african-all Africa Synth Population Tumor Gene Expression African All | Africa (Electric Sheep Africa metadata inventory) Size category: 10K<n<100K - Formats: parquet - Sector: health - Engineered by Electric Sheep Africa TL;DR This dataset is part of the Electric Sheep Africa catalog on Hugging Face. It is indexed for African data discovery with standardized metadata, loading guidance, provenance notes, and analyst-oriented context. What This Dataset Covers… See the full description on the dataset page: https://huggingface.co/datasets/electricsheepafrica/africa-synth-population-tumor-gene-expression-african-all.tabulartabular-classification10K<n<100K0 likes71 downloads1mo agoHugging Face09Gurveer05 /maize-nam-gene-expression-data Promoter Sequences and Corresponding Gene Expression data for Maize NAM lines The data in this dataset has the promoter sequences and the corresponding gene expression data as TPM values for 26 Maize NAM lines and has been used for the finetuning step (for the downstream task of gene expression prediction) of Florabert. The data has been split into train, test and eval data (70-20-10 split). In all, there are ~ 7,00,000 entries across the files. The steps followed to obtain this… See the full description on the dataset page: https://huggingface.co/datasets/Gurveer05/maize-nam-gene-expression-data.text100K<n<1M0 likes66 downloads3y agoHugging Face10Debjit112 /gene_expression_omnibus_nlpannotations_creators: no-annotation languages: -English All data pulled from Gene Expression Omnibus website. tab separated file with GSE number followed by title and abstract text. text100K<n<1M1 likes55 downloads6d agoHugging Face11mhysadptr /RNA-seq-gene-expressionn<1K0 likes32 downloads2mo agoHugging Face12VatsalPatel18 /tcga-hnscc-hpv-negative-scaled-gene-expressiontabularn<1K0 likes30 downloads2y agoHugging Face13spiccolo /gene_expression_omnibus_nlpannotations_creators: no-annotation languages: -English All data pulled from Gene Expression Omnibus website. tab separated file with GSE number followed by title and abstract text. text100K<n<1M0 likes29 downloads4y agoHugging Face14ai-market /gene-expression-differential-analysis-dataset-10-g-sample0 likes24 downloads7d agoHugging Face15wanglab /promoter_rbs_gene_expressiongated Promoter-RBS mRNA Expression This dataset contains mRNA expression of a gene downstream of ∼12k promoter-RBS pairs in E. coli. text10K<n<100K0 likes12 downloads2y agoHugging Face16Shoriful025 /Synthetic_Biology_Gene_Expression_Datatabularn<1K0 likes9 downloads9mo agoHugging Face17MarcAmil /Zrimec_gene_expression_transcriptstext1K<n<10K0 likes7 downloads2y agoHugging Face18mahabubmallik /Single-Cell_Gene_Expression0 likes2 downloads2y agoHugging Face

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