datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
fungi_trait_circus_database
fungi_trait_circus_database
大菌輪「Trait Circus」データセット（統制形質）
最終更新日：2025/09/28
重要：データ形式を大幅に更新しました（v2.0）
Languages
Japanese and English
Please do not use this dataset for academic purposes for the time being. (casual use only)
非専門家が作成したデータセットです。学術目的での使用はご遠慮ください。
更新履歴
2025/09/28 (v2.0) - データ構造を全面改訂、Parquet形式に移行、データ量を約2倍に拡充（約400万件）
2025/08/12 (v1.0) - 初回公開版（約180万件）
概要
Atsushi Nakajima（中島淳志）が個人で運営しているWebサイト大菌輪… See the full description on the dataset page: https://huggingface.co/datasets/Atsushi/fungi_trait_circus_database.fungi_diagnostic_chars_comparison_japanese
fungi_diagnostic_chars_comparison_japanese大菌輪「識別形質まとめ」データセット最終更新日 / Last updated: 2026/8/29（up to R3-14214）
Languages
Japanese
This dataset is available in Japanese only.
概要 / Overview
Atsushi Nakajima（中島淳志）が個人で運営しているWebサイト大菌輪では、数千件以上の菌類分類学論文を「論文3行まとめ」という形で要約および索引付け（インデキシング）した情報を提供しています。その一環として、ある菌と別の菌の「共通する」あるいは「異なる」識別形質 (diagnostic characters) に関する記述を人手で抽出しています。
Daikinrin, a personal website run by Atsushi Nakajima, provides summaries and… See the full description on the dataset page: https://huggingface.co/datasets/Atsushi/fungi_diagnostic_chars_comparison_japanese.ref_seq_fungidanish-fungi-2024-pairs-800pxfungifutures
Dataset Card for "fungi_futures"
More Information needed
fungi-histone-modifications
fungi-histone-modifications
12 fungal histone-mark binary classification tasks — each subset is a ready-to-use train/dev/test.csv (columns: sequence,label; 500 bp windows) for fine-tuning DNA foundation models.
Subsets (12)
Subset
Source
Description
H3
GUE EMP
Histone H3 bound regions (S. cerevisiae ChIP-chip)
H3K4me1
GUE EMP
H3K4 monomethylation
H3K4me2
GUE EMP
H3K4 dimethylation
H3K4me3
GUE EMP
H3K4 trimethylation (active promoters)
H3K9ac
GUE… See the full description on the dataset page: https://huggingface.co/datasets/zhangtaolab/fungi-histone-modifications.FungiHelixSeek-Anno
FungiHelixSeek-Anno (dataset)
Gene-structure fine-tuning data for FungiHelixSeek-Anno — species-balanced, intron-tilted genomic windows with per-nucleotide BILOU labels (17 tags: O + B/I/L/U × CDS/INTRON/UTR5/UTR3), built from 122 curated fungal genome annotations.
Files
File
Size
Content
train.parquet
873 MB
245k training windows (8,192 bp, species-balanced + intron-weighted)
val.parquet
22 MB
Validation windows
splits/species_split.tsv
—… See the full description on the dataset page: https://huggingface.co/datasets/zhangtaolab/FungiHelixSeek-Anno.fungi-rag-agent-sft-database
Fungi RAG Agent SFT Database
This dataset contains the supervised fine-tuning database used to train the
JacktheLander/smollm2-1.7b-fungi-rag-agent-distill-lora-gguf adapter.
It was built for the project-owned fungi RAG learning system:
JacktheLander/FunghiResearchAgent
The examples teach a small local language model to follow the system's agent contract:
use rag.search for evidence-backed mycology answers,
use safety.review for wild-mushroom edibility, field-identification… See the full description on the dataset page: https://huggingface.co/datasets/JacktheLander/fungi-rag-agent-sft-database.fungi
Dataset Card for "fungi"
More Information needed
fungifutures2
Dataset Card for "fungifutures2"
More Information needed
prompt-fungineer-v2-training-datafungi-id
🍄 Fungi ID Dataset
This dataset contains 2,829 curated images of fungal species, specifically prepared to support the FungiTastic Identification System web application. It provides one representative image per species, optimized for browser-based visual comparison and reference.
🔍 Dataset Purpose
This dataset is not intended for model training. Instead, it is designed to be used alongside the FungiTastic-optimized Swin Transformer model for:
Visual Verification:… See the full description on the dataset page: https://huggingface.co/datasets/meed2000/fungi-id.danish-fungi-2024-pairs-800px