datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
PDB-Monomeric-Structure-ESMFold2
PDB-Monomeric-Structure-ESMFold2
Monomeric, protein-only PDB structure dataset for minimum ESMFold2-style
training. Each row is one eligible single-chain biological assembly with a
canonical amino-acid sequence input and all-atom protein labels in atom37.
Labels
atom37_positions: residue x 37 x 3 coordinates, with zeros for missing atoms.
atom37_mask: residue x 37 resolved-atom mask.
aatype, residue_index, auth_seq_id, insertion_code, residue_name, ca_mask.… See the full description on the dataset page: https://huggingface.co/datasets/Synthyra/PDB-Monomeric-Structure-ESMFold2.Thermostability_ESMFold
Thermostability Dataset with ESMFold Structural Sequence
Description: In materials science and molecular biology, thermostability is the ability of a substance to resist irreversible change in its chemical or physical structure, often by resisting decomposition or polymerization, at a high relative temperature.
Number of labels: 1
Problem Type: regression
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/Thermostability_ESMFold.DeepSol_ESMFold
DeepSol Dataset with ESMFold Structural Sequence
Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis.
Number of labels: 2
Problem Type: single_label_classification
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary structure sequence
Github
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepSol_ESMFold.ProtSolM_ESMFold
ProtSolM PDB Dataset (PDBSol)
Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis.
Number of labels: 2
Problem Type: single_label_classification
Columns:
aa_seq: protein amino acid sequence
detail: meta information
Github
ProtSolM: Protein Solubility Prediction with Multi-modal Features
https://github.com/tyang816/ProtSolM
VenusFactory: A Unified Platform for Protein Engineering Data Retrieval… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/ProtSolM_ESMFold.DeepET_Topt_ESMFold
DeepET_Topt Dataset
Description: protein optimum temperature.
Number of labels: 1
Problem Type: regression
Columns:
aa_seq: protein amino acid sequence
ss8_seq: DSSP 8 secondary structure sequence
foldseek_seq: foldseek 20 3di structural sequence
ss3_seq: DSSP 3 secondary structure sequence
Github
VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning
https://github.com/ai4protein/VenusFactory
Citation
Please… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepET_Topt_ESMFold.DeepSoluE_ESMFold
DeepSoluE Dataset with ESMFold Structural Sequence
Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis.
Number of labels: 2
Problem Type: single_label_classification
Columns:
aa_seq: protein amino acid sequence
foldseek_seq: foldseek 20 3di structural sequence
ss8_seq: DSSP 8 secondary structure sequence
Github
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/DeepSoluE_ESMFold.eSOL_ESMFold
eSOL Dataset
Description: Solubility is a fundamental protein property that has important connotations for therapeutics and use in diagnosis.
Number of labels: 1
Problem Type: regression
Columns:
aa_seq: protein amino acid sequence
ss8_seq: DSSP 8 secondary structure sequence
foldseek_seq: foldseek 20 3di structural sequence
ss3_seq: DSSP 3 secondary structure sequence
Github
VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language… See the full description on the dataset page: https://huggingface.co/datasets/AI4Protein/eSOL_ESMFold.