datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
TreeOfLife-200M
Dataset Card for TreeOfLife-200M
If you are looking for the original release TreeOfLife-200M dataset, as used in training BioCLIP 2 and presented the paper, please see Revision a8f38b4. The dataset, as presented here, was used to train BioCLIP 2.5 Huge; it completes the dataset cleaning process and resolves an issue where Observation.org occurrences were not included in the training data.
With 233 million images representing 933,798 taxa across the tree of life, TreeOfLife-200M… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/TreeOfLife-200M.fish-vista
Dataset Card for Fish-Visual Trait Analysis (Fish-Vista)
Note that the '</Use this dataset>' option will only load the CSV files. To download the entire dataset, including all processed images and segmentation annotations, refer to Instructions for downloading dataset and images.
See Example Code to Use the Segmentation Dataset
Figure 1. A schematic representation of the different tasks in Fish-Vista Dataset.
Instructions for downloading dataset… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/fish-vista.invasive_plants_hawaii
Dataset Card for Invasive Plants Project
This dataset is aimed at the image multi-classification and segmentation of various leaf damage types caused by biocontrol agents. The dataset contains images of both the dorsal and ventral side of Clidemia Hirta leaves, that were all collected in January 2025 near Hilo (Hawaii), in dirt trails along Steinback Highway. Clidemia Hirta is a highly invasive plant on the island of Hawaii (Big Island).
Dataset Configurations and… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/invasive_plants_hawaii.TreeOfLife-10M
Dataset Card for TreeOfLife-10M
Dataset Summary
With over 10 million images covering 454 thousand taxa in the tree of life, TreeOfLife-10M is the largest-to-date ML-ready dataset of images of biological organisms paired with their associated taxonomic labels. It expands on the foundation established by existing high-quality datasets, such as iNat21 and BIOSCAN-1M, by further incorporating newly curated images from the Encyclopedia of Life (eol.org), which supplies most of… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/TreeOfLife-10M.2018-NEON-beetles
Dataset Card for 2018 NEON Ethanol-preserved Ground Beetles
Collection of ethanol-preserved ground beetles (family Carabidae) collected from various NEON sites in 2018 and photographed in batches in 2022. This dataset contains both group and individual specimen images (individuals segmented from the group images). Elytra measurements of the beetle specimens (taken on the images) are also provided.
Dataset Details
This dataset is composed of a collection of 577 images… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/2018-NEON-beetles.VLM4Bio
Dataset Card for VLM4Bio
Instructions for downloading the dataset
Install Git LFS
Git clone the VLM4Bio repository to download all metadata and associated files
Run the following commands in a terminal:
git clone https://huggingface.co/datasets/imageomics/VLM4Bio
cd VLM4Bio
Downloading and processing bird images
To download the bird images, run the following command:
bash download_bird_images.sh
This should download the bird images inside datasets/Bird/images… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/VLM4Bio.IDLE-OO-Camera-Traps
Dataset Card for IDLE-OO Camera Traps
IDLE-OO Camera Traps is a 5-dataset benchmark of camera trap images from the Labeled Information Library of Alexandria: Biology and Conservation (LILA BC) with a total of 2,586 images for species classification. Each of the 5 benchmarks is balanced to have the same number of images for each species within it (between 310 and 1120 images), representing between 16 and 39 species.
Supported Tasks and Leaderboards
Image… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/IDLE-OO-Camera-Traps.TreeOfLife-200M-Embeddings
TreeOfLife-200M Embeddings
Pre-computed image embeddings for all images from the TreeOfLife-200M dataset (revision 94bbc0b), sorted by taxonomic hierarchy for efficient filtered access.
This repository hosts embedding configs for TreeOfLife-200M. Each config corresponds to a different embedding model and/or precision. Currently available: BioCLIP 2 (float16) and BioCLIP 2.5 Huge (float16, L2-normalized). Additional configs will be added as new embeddings are generated.
We… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/TreeOfLife-200M-Embeddings.mmla_wilds
Dataset Card for MMLA The Wilds
Dataset Details
This dataset contains annotated video frames of giraffes, Grevy's zebras, Persian onagers, and African Painted Dogs, collected at The Wilds in Ohio. The dataset is intended for use in training and evaluating computer vision models for animal detection and classification from drone imagery. It includes frames from various sessions, with annotations indicating the presence of animals in the images in YOLO format, and is… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/mmla_wilds.sentinel-beetles
Dataset Card for Beetles as Sentinel Taxa: Predicting drought conditions from NEON specimen imagery
This dataset contains images of pinned carabid beetle specimens collected by the National Ecological Observatory Network (NEON) from ecological sites across the U.S., along with associated metadata and drought severity indices (Standardized Precipitation Evapotranspiration Index (SPEI)). It was developed to for the second HDR ML Challenge, and is intended to support the development of… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/sentinel-beetles.rare-species
Dataset Card for Rare Species Dataset
Dataset Description
Repository: Imageomics/bioclip
Paper: BioCLIP: A Vision Foundation Model for the Tree of Life (arXiv)
Dataset Summary
This dataset was generated alongside TreeOfLife-10M; data (images and text) were pulled from Encyclopedia of Life (EOL) to generate a dataset consisting of rare species for zero-shot-classification and more refined image classification tasks. Here, we use "rare species" to mean species… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/rare-species.questFish2024
Dataset Card for QUEST Fish 2024
Images collected by teachers during a QUEST workshop. In 2024, the images were of fish collected from bodies of water near Princeton University.
Dataset Details
Dataset Structure
/dataset/
<folder>/
<img_id 1>.png
<img_id 2>.png
...
<img_id n>.png
...
<img_id 1>.png
<img_id 2>.png
...
<img_id n>.png
fieldData2024.csv
Data Instances… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/questFish2024.GZCD
Dataset Card for GZCD (Grevy's Zebra Census Dataset)
The GZCD (Grevy's Zebra Census Dataset) is an ecological computer vision dataset designed for wildlife detection, species classification, and individual animal re-identification (Re-ID). Captured entirely in the field, this dataset emphasizes endangered equid and ungulate populations, specifically Grevy's zebras, plains zebras, and reticulated giraffes.
GZCD consists of field photographs captured in Meru County, Kenya, taken… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/GZCD.phylo-fish
Dataset Card for Phylo-Fish
ML-ready dataset containing 38 species of Teleost fishes with an average number of 200 images per species. This semi-balanced subset was sourced from a larger fish image collection from the Great Lakes Invasives Network Project (GLIN)
Dataset Details
Teleost fish images from five ichthyological research collections that participated in the Great Lakes Invasives Network Project (GLIN) (original data source site: web archive link). After… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/phylo-fish.Heliconius-Collection_Cambridge-Butterfly
Dataset Card for Heliconius Collection (Cambridge Butterfly)
Dataset Description
Dataset Summary
Subset of the collection records from Chris Jiggins' research group at the University of Cambridge, collection covers nearly 20 years of field studies.
This subset contains approximately 36,189 RGB images of 11,962 specimens (29,134 images of 10,086 specimens across all Heliconius). Many records have both images and locality data.
Most images were… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/Heliconius-Collection_Cambridge-Butterfly.mmla_opc
Dataset Card for MMLA Ol Pejeta Conservancy
Dataset Details
This is a dataset containing annotated video frames of Plains zebras collected at the Ol Pejeta Conservancy (OPC) in Kenya using the semi-autonomous WildWing system. The dataset is intended for use in training and evaluating computer vision models for animal detection and classification from drone imagery. It includes frames from various sessions,
with annotations indicating the presence of zebras in the… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/mmla_opc.PUUM-koa-restoration-camera-trap-dataset
Dataset Card for Koa Associated Biodiversity Camera Trap Dataset
This dataset is aimed at classification of birds visiting planted Acacia koa (koa) trees in the Pu'u Maka'ala Natural Area Reserve (PUUM) on the island of Hawaii (Big Island). The dataset contains full and cropped images collected by camera trap. These images were collected from January 24th to February 25th, 2025.
Dataset Details
This dataset is aimed at classification of birds visiting planted Acacia… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/PUUM-koa-restoration-camera-trap-dataset.STRI-Samples
Dataset Card for Smithsonian Tropical Research Institute (STRI) Samples
Dataset Summary
Dorsal images of butterfly wings collected by Owen McMillan and members of his lab at the Smithsonian Tropical Research Institute.
Full dataset will be 24,119 RGB images: Dorsal and Ventral images of separated wings. This sample contains 207 dorsal butterfly images used as part of the training data for Imageomics/butterfly_detection_yolo.
Supported Tasks and… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/STRI-Samples.Hawaii-beetles
Dataset Card for Hawaii Beetles
Collection of ground beetle specimen images; specimens collected by the U.S. National Ecological Observatory Network (NEON) at the Pu'u Maka'ala Natural Area Reserve (PUUM) on the Island of Hawai'i (the Big Island). This collection includes both group images (by-tray) and the individual segmented individuals.
Dataset Details
Dataset Description
This dataset comprises 1,614 high-resolution PNG images of individual… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/Hawaii-beetles.mmla_mpala
Dataset Card for mmla-mpala
Dataset Details
This is a dataset containing annotated video frames of giraffes, Grevy's zebras, and Plains zebras collected at the Mpala Research Center in Kenya. The dataset is intended for use in training and evaluating computer vision models for animal detection and classification from drone imagery.
The annotations indicate the presence of animals in the images in YOLO format. The dataset is designed to facilitate research in wildlife… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/mmla_mpala.thewilds_cameratraps
Dataset Card for The Wilds Camera Trap Data
This dataset contains images and video captured from camera traps deployed at The Wilds safari park in Ohio during Summer 2025. It supports ecological monitoring, animal behavior analysis, and biodiversity studies.
Dataset Details
This dataset was created to support wildlife monitoring research using camera traps. Data were collected using various camera trap models, with each camera recording photos and videos in the… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/thewilds_cameratraps.mmla-pose
Dataset Card for MMLA Pose: Pose Orientation Labels for Zebras in MMLA Drone Footage
Cropped zebra images from MMLA drone footage, manually labeled with one of eight discrete pose orientations relative to the camera. The dataset was curated to train a pose / viewpoint classifier (DINOv2 backbone + MLP head) for the WildWing autonomous drone-navigation system, where knowing which side of an animal is visible drives both individual re-identification (matching against flank stripe… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/mmla-pose.TreeOfLife-10M-Captions
Dataset Card for TreeOfLife-10M Captions
This dataset consists of generated captions, Wikipedia-derived descriptions and format examples for the TreeOfLife-10M. These captions were generated using InternVL3-38B based on biological contexts that help the model generate more accurate captions. It was used to train BioCAP, a CLIP-based model.
Dataset Details
This dataset is comprised of captions for the images in TreeOfLife-10M that were generated using InternVL3 38B.… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/TreeOfLife-10M-Captions.fine-grained-challenges
Dataset Card for Fine-Grained Challenges
Fine-Grained Challenges collects focused groups of visually similar animals for testing biological image classifiers. It combines images, taxonomy, provenance, and frozen embeddings from three BioCLIP-family models in one Lance dataset.
Dataset Details
Release v0.1.0 contains three challenge groups:
Challenge group
Focus
Rows
Species-labeled rows
Genus or higher rows
Labeled species
Peromyscus
Deermice and close… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/fine-grained-challenges.imageomics-2025
Anonymized Dataset
Dataset Description
This dataset contains aerial orthomosaic tiles captured at three different times of day (10:00, 12:00, and 15:00). The dataset is organized into three configurations: default (raw images + canopy height), dinov2_base (DINOv2 embeddings), and dinov3_sat (DINOv3 embeddings). All configurations share consistent train/test splits with matching tile identifiers for cross-referencing. The dataset is designed for training vision encoders… See the full description on the dataset page: https://huggingface.co/datasets/anondatasets/imageomics-2025.Curated_GoldStandard_Hoyal_Cuthill
Dataset Card for Curated Gold Standard Hoyal Cuthill Dataset
Dataset Description
Dorsal full body images of subspecies of Heliconius erato and Heliconius melpomene (18 subspecies total).
There are 960 images with 320 specimens (3 images of each specimen: Original/ Bird transformed/ Butterfly transformed)
The original images are low-resolution RGB photographs (photographs were "cropped and resized to a height of 64 pixels (maintaining the original image aspect ratio and… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/Curated_GoldStandard_Hoyal_Cuthill.drone-maneuver-clips
Dataset Card for Drone Maneuver Test-Clip Library
A benchmark of 41 six-second drone clips (180 frames @ 30 fps)
cut from 20 KABR videos across 17 survey sessions at the Mpala Research Centre,
Kenya. Each clip is indexed by which autonomous-flight maneuver it can test
(launch / follow / behavior-adaptive / SoI-aware) and ships with a per-frame-per-track label table.
The library is intended for evaluating drone navigation policies against real wildlife footage.… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/drone-maneuver-clips.NEON-plant-subplot-pilot
Dataset Card for NEON Plant Presence and Percent Cover Subplot Pilot Images
Pilot dataset for using subplot images from the National Ecological Observatory Network (NEON) to detect plant diversity.
Dataset Details
Dataset Description
Repository: PlotDiversiVision
This dataset contains plant diversity images from two NEON sites: CPER and SCBI.
Each image captures a 1-square-meter subplot labeled with plant species.
NEON curated subplot… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/NEON-plant-subplot-pilot.wildwingdeployment
Dataset Card for wildwingdeployment
Dataset Details
This dataset contains video, telemetry, and autonomous navigation traces collected using the WildWing unmanned aerial system (UAS) deployment at The Wilds in July 2024.
Dataset Description
Homepage: https://imageomics.github.io/wildwing/
Repository: https://github.com/Imageomics/wildwing
Paper: WildWing: An open-source, autonomous and affordable UAS for animal behaviour video monitoring
This dataset… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/wildwingdeployment.phenology-normal-hawaii
Dataset Card for Phenology-Normal-Hawaii
Dataset Details
This dataset provides time series of vegetation color indices collected from the PUUM (Pu'u Maka'ala) site, designed to support fine-grained phenological analysis. The time series are extracted from the PhenoCam images captured by NEON at the PUUM site. It includes three types of GCC (Green Chromatic Coordinate) and RCC (Red Chromatic Coordinate) curves:
Raw curves: Original time series extracted from masked… See the full description on the dataset page: https://huggingface.co/datasets/imageomics/phenology-normal-hawaii.