datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
protein-secondary-structure-netsurfp
NetSurfP-3.0 Secondary-Structure Splits
This dataset repo contains NetSurfP-derived protein secondary-structure labels
converted for Protein-I-JEPA probe training and evaluation.
Source page: https://services.healthtech.dtu.dk/services/NetSurfP-3.0/5-Dataset.php
Profile: hhblits
Labels are Q3 per-residue labels:
H: helix
E: beta strand
C: coil/other
.: ignored residue for loss and accuracy
Splits
Split
Rows
JSONL
TSV
train
10348
train.jsonl
tsv/train.tsv… See the full description on the dataset page: https://huggingface.co/datasets/lamm-mit/protein-secondary-structure-netsurfp.protein-structure-trust-benchmark
Protein-Structure Trust-Routing Benchmark (Boltz-2)
Leakage-controlled benchmarks for confidence-calibrated trust routing over a protein-structure
predictor: given a specialist model's confidence (Boltz-2 ipTM / pLDDT) for a target, decide whether to
trust the prediction or pay to verify it — and score that decision against experimentally-measured
correctness. Evaluation substrate for the report "When does an LLM trust a specialist model? A cost-aware
trust-routing audit"… See the full description on the dataset page: https://huggingface.co/datasets/jang1563/protein-structure-trust-benchmark.protein-structure-nppe2
Protein Secondary Structure Prediction
Project: 25-t3-nppe2
Models
Model
Validation F1
BiRNN
0.4061 ⭐
BiGRU
0.3724
Configuration
Embedding Dimension: 64
Hidden Dimension: 128
Layers: 2
Dropout: 0.3
Links
Space: https://huggingface.co/spaces/Rohan014/dlgenai-nppe
Project: 25-t3-nppe2
protein-structure-training-data