Datasetpublic

lamm-mit/protein-secondary-structure-netsurfp

NetSurfP-3.0 Secondary-Structure Splits This dataset repo contains NetSurfP-derived protein secondary-structure labels converted for Protein-I-JEPA probe training and evaluation. Source page: https://services.healthtech.dtu.dk/services/NetSurfP-3.0/5-Dataset.php Profile: hhblits Labels are Q3 per-residue labels: H: helix E: beta strand C: coil/other .: ignored residue for loss and accuracy Splits Split Rows JSONL TSV train 10348 train.jsonl… See the full description on the dataset page: https://huggingface.co/datasets/lamm-mit/protein-secondary-structure-netsurfp.

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NetSurfP-3.0 Secondary-Structure Splits

This dataset repo contains NetSurfP-derived protein secondary-structure labels converted for Protein-I-JEPA probe training and evaluation.

Source page: https://services.healthtech.dtu.dk/services/NetSurfP-3.0/5-Dataset.php

Profile: hhblits

Labels are Q3 per-residue labels:

—H: helix
—E: beta strand
—C: coil/other
—.: ignored residue for loss and accuracy

Splits

Split	Rows	JSONL	TSV
`train`	10348	`train.jsonl`	`tsv/train.tsv`
`validation`	500	`validation.jsonl`	`tsv/validation.tsv`
`cb513`	513	`cb513.jsonl`	`tsv/cb513.tsv`
`ts115`	115	`ts115.jsonl`	`tsv/ts115.tsv`
`casp12`	21	`casp12.jsonl`	`tsv/casp12.tsv`

Recommended use:

—train: train the supervised probe.
—validation: tune probe settings.
—cb513, ts115, casp12, and optional casp14_fm: final external tests.