datasets
Training and evaluation data, with the modality, task and licence stated up front. Listed live from the Hugging Face Hub.
TCGA-PANCAN-HiSeq-2770x20530gene expression cancer RNA-Seq - Check the original submission: - https://www.synapse.org/Synapse:syn2812925 - is maintained by the cancer genome atlas pan-cancer analysis project. - TCGA-PANCAN-HiSeq-2770x20530
Files combined:
unc.edu_BRCA_IlluminaHiSeq_RNASeqV2.geneExp (20530, 957) BRCA
unc.edu_KIRC_IlluminaHiSeq_RNASeqV2.geneExp (20530, 552) KIRC
unc.edu_LUAD_IlluminaHiSeq_RNASeqV2.geneExp (20530, 413) LUAD
unc.edu_THCA_IlluminaHiSeq_RNASeqV2.geneExp (20530, 471) THCA… See the full description on the dataset page: https://huggingface.co/datasets/Fllamber/TCGA-PANCAN-HiSeq-2770x20530.TCGA_OncoTree_pt2
TCGA_OncoTree_pt2
1. Tổng quan
[CẦN ĐIỀN THỦ CÔNG: mục đích, ngữ cảnh tạo dataset]
Tổng số bản ghi (cộng tất cả manifest phát hiện được): 23984
Số manifest phát hiện được trong bộ nhớ: 3 (df, labels_df, progress)
Repo HuggingFace chính: ento3686/TCGA_OncoTree_pt2
⚠️ Dataset được lưu trên 2 repo/tài khoản HuggingFace khác nhau:
ento3686/TCGA_OncoTree_pt2 (biến: REPO_ID_2, UPLOAD_REPO_ID, CENTRAL_PROGRESS_REPO_ID, _repo_id_var)
tuna2004/TCGA_OncoTree (biến:… See the full description on the dataset page: https://huggingface.co/datasets/ento3686/TCGA_OncoTree_pt2.Refined-TCGA-PRAD-Prostate-Cancer-Pathology-Dataset
Note: Our 245 TCGA cases are ones we identified as having potential for improvement.
We plan to upload them in two phases: the first batch of 138 cases, and the second batch of 107 cases in the quality review pipeline, we plan to upload them around early of January, 2025.
Dataset: A Second Opinion on TCGA PRAD Prostate Dataset Labels with ROI-Level Annotations
Overview
This dataset provides enhanced Gleason grading annotations for the TCGA PRAD prostate cancer… See the full description on the dataset page: https://huggingface.co/datasets/Humanbased-AI/Refined-TCGA-PRAD-Prostate-Cancer-Pathology-Dataset.biolatent-brca-tcgaYear: 2025License: TCGA/GDC Data Use PoliciesAuthor: Sepideh Moafi
BioLatent-BRCA-TCGA Dataset
Dataset Summary
A processed transcriptomic dataset derived from TCGA-BRCA RNA-seq data, developed as part of the OmniLatent research project for representation learning on high-dimensional gene-expression data.
The dataset contains 1,231 samples × 23,375 genes with log1p(TPM) transformation and gene filtering applied.
Source and Provenance
Source: NCI… See the full description on the dataset page: https://huggingface.co/datasets/Sepideh2027/biolatent-brca-tcga.TCGA-OV-AS
The Cancer Genome Atlas Ovarian Cancer for Ascites Segmentation (TCGA-OV-AS)
This dataset was curated as part of the research 'Deep Learning Segmentation of Ascites on Abdominal CT Scans for Automatic Volume Quantification' (Paper, arXiv).
To replicate TCGA-OV-AS, please download TCGA-OV from TCIA using the Descriptive Directory Name download option.
Converting Images
Convert the DICOMs to NIFTI format using dcm2niix and GNU parallel.
Create the directory structure… See the full description on the dataset page: https://huggingface.co/datasets/farrell236/TCGA-OV-AS.TCGA_OncoTreeTCGA_BRCA_DatasetTCGA-Cancer-Variant-and-Clinical-Data
TCGA Cancer Variant and Clinical Data
Dataset Description
This dataset combines genetic variant information at the protein level with clinical data from The Cancer Genome Atlas (TCGA) project, curated by the International Cancer Genome Consortium (ICGC). It provides a comprehensive view of protein-altering mutations and clinical characteristics across various cancer types.
Dataset Summary
The dataset includes:
Protein sequence data for both mutated and… See the full description on the dataset page: https://huggingface.co/datasets/seq-to-pheno/TCGA-Cancer-Variant-and-Clinical-Data.tcga-hnscc-hpv-negative-scaled-gene-expressionTCGA-SARC-dict-tumorTCGA-Cancer-Variant-and-Clinical-Data
TCGA Cancer Variant and Clinical Data
Dataset Description
This dataset combines genetic variant information at the protein level with clinical data from The Cancer Genome Atlas (TCGA) project, curated by the International Cancer Genome Consortium (ICGC). It provides a comprehensive view of protein-altering mutations and clinical characteristics across various cancer types.
Dataset Summary
The dataset includes:
Protein sequence data for both mutated and… See the full description on the dataset page: https://huggingface.co/datasets/hammad655/TCGA-Cancer-Variant-and-Clinical-Data.tcga-rcctcga-path-notesTCGA_Reports.csv: cleaned text extracted from TCGA reports. From Kefeli et al.
mmc1.xlsx: Survival data for TCGA. From Liu et al.
tcga_t_stage