Datasetpublic

ento3686/TCGA_OncoTree_pt2

TCGA_OncoTree_pt2 1. Tổng quan [CẦN ĐIỀN THỦ CÔNG: mục đích, ngữ cảnh tạo dataset] Tổng số bản ghi (cộng tất cả manifest phát hiện được): 23984 Số manifest phát hiện được trong bộ nhớ: 3 (df, labels_df, progress) Repo HuggingFace chính: ento3686/TCGA_OncoTree_pt2 ⚠️ Dataset được lưu trên 2 repo/tài khoản HuggingFace khác nhau: ento3686/TCGA_OncoTree_pt2 (biến: REPO_ID_2, UPLOAD_REPO_ID, CENTRAL_PROGRESS_REPO_ID, _repo_id_var) tuna2004/TCGA_OncoTree (biến:… See the full description on the dataset page: https://huggingface.co/datasets/ento3686/TCGA_OncoTree_pt2.

sourceHugging Faceupdated 20d agoView on Hugging Face

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Dataset Card

TCGAOncoTreept2

1. Tổng quan

[CẦN ĐIỀN THỦ CÔNG: mục đích, ngữ cảnh tạo dataset]

—Tổng số bản ghi (cộng tất cả manifest phát hiện được): 23984
—Số manifest phát hiện được trong bộ nhớ: 3 (df, labels_df, progress)
—Repo HuggingFace chính: ento3686/TCGA_OncoTree_pt2

⚠️ Dataset được lưu trên 2 repo/tài khoản HuggingFace khác nhau:

—ento3686/TCGA_OncoTree_pt2 (biến: REPOID2, UPLOADREPOID, CENTRALPROGRESSREPOID, repoidvar)
—tuna2004/TCGA_OncoTree (biến: REPOID1)

2. Cấu trúc lưu trữ tại đích

/   # suy từ hàm `HfApi`
file.txt   # suy từ hàm `HfApi`
lfs.bin   # suy từ hàm `HfApi`
shard_{i}_of_5.bin   # suy từ hàm `HfApi`
remote/file/path.h5   # suy từ hàm `HfApi`
experiment   # suy từ hàm `HfApi`
remote/experiment/checkpoints   # suy từ hàm `HfApi`
svs/{file_name}   # suy từ hàm `process_batch`

(PATH_PREFIX hiện tại = ``)

3. Manifest và các cột dữ liệu

Xem chi tiết theo từng manifest ở mục 4 bên dưới (mỗi manifest phát hiện tự động có cấu trúc cột riêng).

4. Nhãn phân loại (Labels)

Manifest: `df` (1612 bản ghi)

Nguồn dữ liệu phát hiện được:

—TCGA-ACC
—TCGA-BLCA
—TCGA-BRCA
—TCGA-CESC
—TCGA-COAD
—TCGA-ESCA
—TCGA-GBM
—TCGA-HNSC
—TCGA-KICH
—TCGA-KIRC
—TCGA-KIRP
—TCGA-LGG
—TCGA-LIHC
—TCGA-LUAD
—TCGA-LUSC
—TCGA-MESO
—TCGA-OV
—TCGA-PAAD
—TCGA-PCPG
—TCGA-PRAD
—TCGA-READ
—TCGA-SARC
—TCGA-SKCM
—TCGA-STAD
—TCGA-TGCT
—TCGA-THCA
—TCGA-THYM
—TCGA-UCEC
—TCGA-UCS
—TCGA-UVM

Cột dữ liệu:

Cột	Dtype	Số giá trị thiếu (NaN)
slide_id	object	0
case_id	object	0
project_id	object	0
sex	object	0
OncoTreeCode	object	0
OncoTreeSiteCode	object	0
site	object	6
source_site	object	6

Nhãn phân loại:

sex

class	count	pct
M	838	51.99
F	753	46.71
U	21	1.3

[image]

Breakdown theo nguồn (project_id):

sex	TCGA-ACC	TCGA-BLCA	TCGA-BRCA	TCGA-CESC	TCGA-COAD	TCGA-ESCA	TCGA-GBM	TCGA-HNSC	TCGA-KICH	TCGA-KIRC	TCGA-KIRP	TCGA-LGG	TCGA-LIHC	TCGA-LUAD	TCGA-LUSC	TCGA-MESO	TCGA-OV	TCGA-PAAD	TCGA-PCPG	TCGA-PRAD	TCGA-READ	TCGA-SARC	TCGA-SKCM	TCGA-STAD	TCGA-TGCT	TCGA-THCA	TCGA-THYM	TCGA-UCEC	TCGA-UCS	TCGA-UVM
F	27	16	84	40	21	4	25	14	11	13	8	70	18	22	8	3	23	15	15	0	9	81	13	28	0	41	22	84	34	4
M	23	33	1	0	39	18	25	33	8	36	38	134	28	26	40	14	0	17	12	44	16	66	35	46	66	15	19	0	0	6
U	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	9	0	0	0	0	0

[image]

OncoTreeCode

class	count	pct
GBM	50	3.1
ACC	50	3.1
IDC	49	3.04
BLCA	49	3.04
CCRCC	49	3.04
COAD	49	3.04
LUAD	48	2.98
LUSC	48	2.98
HNSC	47	2.92
HCC	46	2.85
PRCC	46	2.85
STAD	46	2.85
ODG	46	2.85
OAST	45	2.79
THPA	45	2.79
UEC	44	2.73
PRAD	44	2.73
NSGCT	43	2.67
MFS	41	2.54
THYM	41	2.54
AOAST	41	2.54
MFH	40	2.48
USC	40	2.48
CESC	40	2.48
AASTR	39	2.42
LMS	37	2.3
ILC	36	2.23
UCS	34	2.11
ASTR	33	2.05
SEM	32	1.99
PAAD	32	1.99
MEL	31	1.92
SKCM	29	1.8
DDLS	29	1.8
PHC	27	1.67
READ	25	1.55
HGSOC	23	1.43
CHRCC	19	1.18
PLEMESO	17	1.05
DSTAD	14	0.87
TSTAD	14	0.87
ESCC	12	0.74
MACR	11	0.68
THFO	11	0.68
UM	10	0.62
ESCA	10	0.62

[image]

Breakdown theo nguồn (project_id):

OncoTreeCode	TCGA-ACC	TCGA-BLCA	TCGA-BRCA	TCGA-CESC	TCGA-COAD	TCGA-ESCA	TCGA-GBM	TCGA-HNSC	TCGA-KICH	TCGA-KIRC	TCGA-KIRP	TCGA-LGG	TCGA-LIHC	TCGA-LUAD	TCGA-LUSC	TCGA-MESO	TCGA-OV	TCGA-PAAD	TCGA-PCPG	TCGA-PRAD	TCGA-READ	TCGA-SARC	TCGA-SKCM	TCGA-STAD	TCGA-TGCT	TCGA-THCA	TCGA-THYM	TCGA-UCEC	TCGA-UCS	TCGA-UVM
AASTR	0	0	0	0	0	0	0	0	0	0	0	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACC	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AOAST	0	0	0	0	0	0	0	0	0	0	0	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ASTR	0	0	0	0	0	0	0	0	0	0	0	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
BLCA	0	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CCRCC	0	0	0	0	0	0	0	0	0	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CESC	0	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CHRCC	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COAD	0	0	0	0	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
DDLS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0	0	0
DSTAD	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0
ESCA	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ESCC	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GBM	0	0	0	0	0	0	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
HCC	0	0	0	0	0	0	0	0	0	0	0	0	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
HGSOC	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0
HNSC	0	0	0	0	0	0	0	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
IDC	0	0	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ILC	0	0	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
LMS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	37	0	0	0	0	0	0	0	0
LUAD	0	0	0	0	0	0	0	0	0	0	0	0	0	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
LUSC	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
MACR	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
MEL	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	0	0	0
MFH	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40	0	0	0	0	0	0	0	0
MFS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41	0	0	0	0	0	0	0	0
NSGCT	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	0	0	0	0	0
OAST	0	0	0	0	0	0	0	0	0	0	0	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ODG	0	0	0	0	0	0	0	0	0	0	0	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
PAAD	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	0	0	0	0	0	0	0	0	0	0	0	0
PHC	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0
PLEMESO	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0
PRAD	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44	0	0	0	0	0	0	0	0	0	0
PRCC	0	0	0	0	0	0	0	0	0	0	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
READ	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0
SEM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	0	0	0	0	0
SKCM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0	0
STAD	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46	0	0	0	0	0	0
THFO	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0
THPA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	45	0	0	0	0
THYM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41	0	0	0
TSTAD	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0
UCS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34	0
UEC	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44	0	0
UM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10
USC	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	40	0	0

[image]

OncoTreeSiteCode

class	count	pct
BRAIN	254	15.76
SOFT_TISSUE	138	8.56
UTERUS	126	7.82
KIDNEY	114	7.07
STOMACH	101	6.27
LUNG	96	5.96
BOWEL	90	5.58
BREAST	85	5.27
ADRENAL_GLAND	77	4.78
TESTIS	75	4.65
THYROID	56	3.47
BLADDER	49	3.04
HEAD_NECK	47	2.92
LIVER	46	2.85
PROSTATE	44	2.73
SKIN	42	2.61
CERVIX	40	2.48
THYMUS	35	2.17
PANCREAS	32	1.99
OVARY	23	1.43
PLEURA	17	1.05
LYMPH	14	0.87
EYE	10	0.62
PERITONEUM	1	0.06

[image]

Breakdown theo nguồn (project_id):

OncoTreeSiteCode	TCGA-ACC	TCGA-BLCA	TCGA-BRCA	TCGA-CESC	TCGA-COAD	TCGA-ESCA	TCGA-GBM	TCGA-HNSC	TCGA-KICH	TCGA-KIRC	TCGA-KIRP	TCGA-LGG	TCGA-LIHC	TCGA-LUAD	TCGA-LUSC	TCGA-MESO	TCGA-OV	TCGA-PAAD	TCGA-PCPG	TCGA-PRAD	TCGA-READ	TCGA-SARC	TCGA-SKCM	TCGA-STAD	TCGA-TGCT	TCGA-THCA	TCGA-THYM	TCGA-UCEC	TCGA-UCS	TCGA-UVM
ADRENAL_GLAND	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0
BLADDER	0	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
BOWEL	0	0	0	0	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	3	2	0	0	0	0	0	0	0
BRAIN	0	0	0	0	0	0	50	0	0	0	0	204	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
BREAST	0	0	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CERVIX	0	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
EYE	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10
HEAD_NECK	0	0	0	0	0	0	0	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
KIDNEY	0	0	0	0	0	0	0	0	19	49	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
LIVER	0	0	0	0	0	0	0	0	0	0	0	0	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
LUNG	0	0	0	0	0	0	0	0	0	0	0	0	0	48	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
LYMPH	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0
OVARY	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0
PANCREAS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	0	0	0	0	0	0	0	0	0	0	0	0
PERITONEUM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
PLEURA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0
PROSTATE	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	44	0	0	0	0	0	0	0	0	0	0
SKIN	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42	0	0	0	0	0	0	0
SOFT_TISSUE	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	130	2	0	0	0	6	0	0	0
STOMACH	0	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	74	0	0	0	0	0	0
TESTIS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	75	0	0	0	0	0
THYMUS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0
THYROID	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56	0	0	0	0
UTERUS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	84	34	0

[image]

Manifest: `labels_df` (11186 bản ghi)

Nguồn dữ liệu phát hiện được:

—TCGA-ACC
—TCGA-BLCA
—TCGA-BRCA
—TCGA-CESC
—TCGA-COAD
—TCGA-ESCA
—TCGA-GBM
—TCGA-HNSC
—TCGA-KICH
—TCGA-KIRC
—TCGA-KIRP
—TCGA-LGG
—TCGA-LIHC
—TCGA-LUAD
—TCGA-LUSC
—TCGA-MESO
—TCGA-OV
—TCGA-PAAD
—TCGA-PCPG
—TCGA-PRAD
—TCGA-READ
—TCGA-SARC
—TCGA-SKCM
—TCGA-STAD
—TCGA-TGCT
—TCGA-THCA
—TCGA-THYM
—TCGA-UCEC
—TCGA-UCS
—TCGA-UVM

Cột dữ liệu:

Cột	Dtype	Số giá trị thiếu (NaN)
slide_id	object	0
case_id	object	0
project_id	object	0
sex	object	0
OncoTreeCode	object	0
OncoTreeSiteCode	object	0
site	object	12
source_site	object	12
split	object	0

Nhãn phân loại:

sex

class	count	pct
M	5526	49.4
F	5421	48.46
U	239	2.14

[image]

Breakdown theo nguồn (project_id):

sex	TCGA-ACC	TCGA-BLCA	TCGA-BRCA	TCGA-CESC	TCGA-COAD	TCGA-ESCA	TCGA-GBM	TCGA-HNSC	TCGA-KICH	TCGA-KIRC	TCGA-KIRP	TCGA-LGG	TCGA-LIHC	TCGA-LUAD	TCGA-LUSC	TCGA-MESO	TCGA-OV	TCGA-PAAD	TCGA-PCPG	TCGA-PRAD	TCGA-READ	TCGA-SARC	TCGA-SKCM	TCGA-STAD	TCGA-TGCT	TCGA-THCA	TCGA-THYM	TCGA-UCEC	TCGA-UCS	TCGA-UVM
F	125	121	1038	229	210	21	312	129	50	184	75	353	119	296	125	13	107	94	90	0	71	297	99	126	0	377	96	542	87	35
M	102	336	11	0	228	137	546	343	59	335	222	490	243	235	387	49	0	100	72	449	85	251	173	228	176	140	84	0	0	45
U	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	196	0	43	0	0	0	0	0

[image]

OncoTreeCode

class	count	pct
GBM	858	7.67
IDC	838	7.49
LUAD	531	4.75
CCRCC	519	4.64
LUSC	512	4.58
HNSC	472	4.22
BLCA	457	4.09
PRAD	449	4.01
UEC	422	3.77
THPA	408	3.65
MEL	393	3.51
COAD	375	3.35
HCC	362	3.24
PRCC	297	2.66
CESC	229	2.05
ACC	227	2.03
OAST	217	1.94
ILC	211	1.89
ODG	203	1.81
PAAD	194	1.73
STAD	193	1.73
THYM	180	1.61
MFH	165	1.48
AASTR	164	1.47
PHC	163	1.46
READ	156	1.39
LMS	155	1.39
AOAST	155	1.39
MFS	141	1.26
NSGCT	128	1.14
USC	120	1.07
CHRCC	109	0.97
THFO	109	0.97
HGSOC	107	0.96
ASTR	104	0.93
ESCC	92	0.82
SEM	91	0.81
DDLS	87	0.78
TSTAD	87	0.78
UCS	87	0.78
UM	79	0.71
SKCM	75	0.67
DSTAD	74	0.66
ESCA	66	0.59
MACR	63	0.56
PLEMESO	62	0.55

[image]

Breakdown theo nguồn (project_id):

OncoTreeCode	TCGA-ACC	TCGA-BLCA	TCGA-BRCA	TCGA-CESC	TCGA-COAD	TCGA-ESCA	TCGA-GBM	TCGA-HNSC	TCGA-KICH	TCGA-KIRC	TCGA-KIRP	TCGA-LGG	TCGA-LIHC	TCGA-LUAD	TCGA-LUSC	TCGA-MESO	TCGA-OV	TCGA-PAAD	TCGA-PCPG	TCGA-PRAD	TCGA-READ	TCGA-SARC	TCGA-SKCM	TCGA-STAD	TCGA-TGCT	TCGA-THCA	TCGA-THYM	TCGA-UCEC	TCGA-UCS	TCGA-UVM
AASTR	0	0	0	0	0	0	0	0	0	0	0	164	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACC	227	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AOAST	0	0	0	0	0	0	0	0	0	0	0	155	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ASTR	0	0	0	0	0	0	0	0	0	0	0	104	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
BLCA	0	457	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CCRCC	0	0	0	0	0	0	0	0	0	519	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CESC	0	0	0	229	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CHRCC	0	0	0	0	0	0	0	0	109	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
COAD	0	0	0	0	375	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
DDLS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	87	0	0	0	0	0	0	0	0
DSTAD	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	74	0	0	0	0	0	0
ESCA	0	0	0	0	0	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ESCC	0	0	0	0	0	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GBM	0	0	0	0	0	0	858	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
HCC	0	0	0	0	0	0	0	0	0	0	0	0	362	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
HGSOC	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	107	0	0	0	0	0	0	0	0	0	0	0	0	0
HNSC	0	0	0	0	0	0	0	472	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
IDC	0	0	838	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ILC	0	0	211	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
LMS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	155	0	0	0	0	0	0	0	0
LUAD	0	0	0	0	0	0	0	0	0	0	0	0	0	531	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
LUSC	0	0	0	0	0	0	0	0	0	0	0	0	0	0	512	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
MACR	0	0	0	0	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
MEL	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	393	0	0	0	0	0	0	0
MFH	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	165	0	0	0	0	0	0	0	0
MFS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	141	0	0	0	0	0	0	0	0
NSGCT	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	128	0	0	0	0	0
OAST	0	0	0	0	0	0	0	0	0	0	0	217	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ODG	0	0	0	0	0	0	0	0	0	0	0	203	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
PAAD	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	194	0	0	0	0	0	0	0	0	0	0	0	0
PHC	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	162	0	0	0	0	0	0	0	0	0	0	1
PLEMESO	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0
PRAD	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	449	0	0	0	0	0	0	0	0	0	0
PRCC	0	0	0	0	0	0	0	0	0	0	297	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
READ	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	156	0	0	0	0	0	0	0	0	0
SEM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	91	0	0	0	0	0
SKCM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	75	0	0	0	0	0	0	0
STAD	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	193	0	0	0	0	0	0
THFO	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	109	0	0	0	0
THPA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	408	0	0	0	0
THYM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	180	0	0	0
TSTAD	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	87	0	0	0	0	0	0
UCS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	87	0
UEC	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	422	0	0
UM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	79
USC	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	120	0	0

[image]

OncoTreeSiteCode

class	count	pct
BRAIN	1702	15.22
LUNG	1049	9.38
BREAST	1048	9.37
KIDNEY	927	8.29
UTERUS	664	5.94
BOWEL	605	5.41
SOFT_TISSUE	551	4.93
STOMACH	518	4.63
THYROID	517	4.62
HEAD_NECK	474	4.24
BLADDER	457	4.09
PROSTATE	449	4.01
ADRENAL_GLAND	389	3.48
LIVER	363	3.25
SKIN	316	2.82
CERVIX	229	2.05
TESTIS	220	1.97
PANCREAS	194	1.73
THYMUS	146	1.31
LYMPH	111	0.99
OVARY	108	0.97
EYE	80	0.72
PLEURA	61	0.55
BONE	3	0.03
SPLEEN	2	0.02
THORAX, NOS	1	0.01
VULVA	1	0.01
PERITONEUM	1	0.01

[image]

Breakdown theo nguồn (project_id):

OncoTreeSiteCode	TCGA-ACC	TCGA-BLCA	TCGA-BRCA	TCGA-CESC	TCGA-COAD	TCGA-ESCA	TCGA-GBM	TCGA-HNSC	TCGA-KICH	TCGA-KIRC	TCGA-KIRP	TCGA-LGG	TCGA-LIHC	TCGA-LUAD	TCGA-LUSC	TCGA-MESO	TCGA-OV	TCGA-PAAD	TCGA-PCPG	TCGA-PRAD	TCGA-READ	TCGA-SARC	TCGA-SKCM	TCGA-STAD	TCGA-TGCT	TCGA-THCA	TCGA-THYM	TCGA-UCEC	TCGA-UCS	TCGA-UVM
ADRENAL_GLAND	227	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	161	0	0	0	1	0	0	0	0	0	0	0
BLADDER	0	457	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
BONE	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
BOWEL	0	0	0	0	438	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	156	3	8	0	0	0	0	0	0	0
BRAIN	0	0	0	0	0	0	858	0	0	0	0	843	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
BREAST	0	0	1048	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CERVIX	0	0	0	229	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
EYE	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	80
HEAD_NECK	0	0	0	0	0	0	0	472	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
KIDNEY	0	0	0	0	0	0	0	0	109	519	297	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
LIVER	0	0	0	0	0	0	0	0	0	0	0	0	362	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
LUNG	0	0	0	0	0	0	0	0	0	0	0	0	0	531	512	1	0	0	0	0	0	0	5	0	0	0	0	0	0	0
LYMPH	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	110	0	0	0	0	0	0	0
OVARY	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	107	0	0	0	0	1	0	0	0	0	0	0	0	0
PANCREAS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	194	0	0	0	0	0	0	0	0	0	0	0	0
PERITONEUM	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
PLEURA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0
PROSTATE	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	449	0	0	0	0	0	0	0	0	0	0
SKIN	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	316	0	0	0	0	0	0	0
SOFT_TISSUE	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	495	21	0	0	0	34	0	0	0
SPLEEN	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
STOMACH	0	0	0	0	0	158	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	354	0	0	0	0	0	0
TESTIS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	219	0	0	0	0	0
THORAX, NOS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
THYMUS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	146	0	0	0
THYROID	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	517	0	0	0	0
UTERUS	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0	0	0	542	87	0
VULVA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

[image]

split

class	count	pct
train	8226	73.54
val	1612	14.41
test	1348	12.05

[image]

Breakdown theo nguồn (project_id):

split	TCGA-ACC	TCGA-BLCA	TCGA-BRCA	TCGA-CESC	TCGA-COAD	TCGA-ESCA	TCGA-GBM	TCGA-HNSC	TCGA-KICH	TCGA-KIRC	TCGA-KIRP	TCGA-LGG	TCGA-LIHC	TCGA-LUAD	TCGA-LUSC	TCGA-MESO	TCGA-OV	TCGA-PAAD	TCGA-PCPG	TCGA-PRAD	TCGA-READ	TCGA-SARC	TCGA-SKCM	TCGA-STAD	TCGA-TGCT	TCGA-THCA	TCGA-THYM	TCGA-UCEC	TCGA-UCS	TCGA-UVM
test	19	32	67	55	52	32	10	87	25	15	54	33	13	178	100	2	9	27	18	23	18	27	25	64	11	167	53	86	11	35
train	158	376	897	134	326	104	798	338	65	455	197	606	303	305	364	43	75	135	117	382	113	374	383	216	133	294	86	372	42	35
val	50	49	85	40	60	22	50	47	19	49	46	204	46	48	48	17	23	32	27	44	25	147	60	74	75	56	41	84	34	10

[image]

Manifest: `progress` (11186 bản ghi)

Nguồn dữ liệu phát hiện được:

—ento3686/TCGAOncoTreept2
—tuna2004/TCGA_OncoTree

Cột dữ liệu:

Cột	Dtype	Số giá trị thiếu (NaN)
id	object	0
status	object	0
repo_id	object	0

Nhãn phân loại:

status

class	count	pct
uploaded	11185	99.99
missing_uuid	1	0.01

[image]

Breakdown theo nguồn (repo_id):

status	ento3686/TCGA_OncoTree_pt2	tuna2004/TCGA_OncoTree
missing_uuid	0	1
uploaded	3271	7914

[image]

5. Cách tải và sử dụng

[CẦN ĐIỀN THỦ CÔNG: hướng dẫn tải/sử dụng dataset, ví dụ code snippet]

6. Quy trình tái tạo (Reproducibility)

[CẦN ĐIỀN THỦ CÔNG: mô tả các bước chạy lại pipeline tải + upload]

7. Giới hạn và lưu ý

—df.sex: class 'M' chiếm 51.99% tổng số
—labels_df.split: class 'train' chiếm 73.54% tổng số
—progress.status: class 'uploaded' chiếm 99.99% tổng số

8. Trích dẫn / Nguồn tham khảo

[CẦN ĐIỀN THỦ CÔNG: paper/license/citation liên quan]

sex	TCGA-ACC	TCGA-BLCA	TCGA-BRCA	TCGA-CESC	TCGA-COAD	TCGA-ESCA	TCGA-GBM	TCGA-HNSC	TCGA-KICH	TCGA-KIRC	TCGA-KIRP	TCGA-LGG	TCGA-LIHC	TCGA-LUAD	TCGA-LUSC	TCGA-MESO	TCGA-OV	TCGA-PAAD	TCGA-PCPG	TCGA-PRAD	TCGA-READ	TCGA-SARC	TCGA-SKCM	TCGA-STAD	TCGA-TGCT	TCGA-THCA	TCGA-THYM	TCGA-UCEC	TCGA-UCS	TCGA-UVM
F	27	16	84	40	21	4	25	14	11	13	8	70	18	22	8	3	23	15	15	0	9	81	13	28	0	41	22	84	34	4
M	23	33	1	0	39	18	25	33	8	36	38	134	28	26	40	14	0	17	12	44	16	66	35	46	66	15	19	0	0	6
U	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	9	0	0	0	0	0

sex	TCGA-ACC	TCGA-BLCA	TCGA-BRCA	TCGA-CESC	TCGA-COAD	TCGA-ESCA	TCGA-GBM	TCGA-HNSC	TCGA-KICH	TCGA-KIRC	TCGA-KIRP	TCGA-LGG	TCGA-LIHC	TCGA-LUAD	TCGA-LUSC	TCGA-MESO	TCGA-OV	TCGA-PAAD	TCGA-PCPG	TCGA-PRAD	TCGA-READ	TCGA-SARC	TCGA-SKCM	TCGA-STAD	TCGA-TGCT	TCGA-THCA	TCGA-THYM	TCGA-UCEC	TCGA-UCS	TCGA-UVM
F	27	16	84	40	21	4	25	14	11	13	8	70	18	22	8	3	23	15	15	0	9	81	13	28	0	41	22	84	34	4
M	23	33	1	0	39	18	25	33	8	36	38	134	28	26	40	14	0	17	12	44	16	66	35	46	66	15	19	0	0	6
U	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	9	0	0	0	0	0

TCGAOncoTreept2

1. Tổng quan

2. Cấu trúc lưu trữ tại đích

3. Manifest và các cột dữ liệu

4. Nhãn phân loại (Labels)

Manifest: df (1612 bản ghi)

sex

OncoTreeCode

OncoTreeSiteCode

Manifest: labels_df (11186 bản ghi)

sex

OncoTreeCode

OncoTreeSiteCode

split

Manifest: progress (11186 bản ghi)

status

5. Cách tải và sử dụng

6. Quy trình tái tạo (Reproducibility)

7. Giới hạn và lưu ý

8. Trích dẫn / Nguồn tham khảo

Manifest: `df` (1612 bản ghi)

Manifest: `labels_df` (11186 bản ghi)

Manifest: `progress` (11186 bản ghi)

sex	TCGA-ACC	TCGA-BLCA	TCGA-BRCA	TCGA-CESC	TCGA-COAD	TCGA-ESCA	TCGA-GBM	TCGA-HNSC	TCGA-KICH	TCGA-KIRC	TCGA-KIRP	TCGA-LGG	TCGA-LIHC	TCGA-LUAD	TCGA-LUSC	TCGA-MESO	TCGA-OV	TCGA-PAAD	TCGA-PCPG	TCGA-PRAD	TCGA-READ	TCGA-SARC	TCGA-SKCM	TCGA-STAD	TCGA-TGCT	TCGA-THCA	TCGA-THYM	TCGA-UCEC	TCGA-UCS	TCGA-UVM
F	27	16	84	40	21	4	25	14	11	13	8	70	18	22	8	3	23	15	15	0	9	81	13	28	0	41	22	84	34	4
M	23	33	1	0	39	18	25	33	8	36	38	134	28	26	40	14	0	17	12	44	16	66	35	46	66	15	19	0	0	6
U	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	9	0	0	0	0	0