xuejun72/HR-VILAGE-3K3M
HR-VILAGE-3K3M: Human Respiratory Viral Immunization Longitudinal Gene Expression This repository provides the HR-VILAGE-3K3M dataset, a curated collection of human longitudinal gene expression profiles, antibody measurements, and aligned metadata from respiratory viral immunization and infection studies. The dataset includes baseline transcriptomic profiles and covers diverse exposure types (vaccination, inoculation, and mixed exposure). HR-VILAGE-3K3M is designed as a… See the full description on the dataset page: https://huggingface.co/datasets/xuejun72/HR-VILAGE-3K3M.
Label the Aug 28, 2026 update as the V3 release
Document the Dataset Viewer contents and point users to study_citations.csv for raw data
Drop the plain-text data-citation block from How to cite
Add dataset citation (repo DOI) alongside the paper citation
Add transcriptomic_data_link column; expose study_citations in the dataset viewer
Add study_citations.csv (source-paper and data citations for all 66 studies)
Remove bulk_gene_expr_raw/ (raw source files no longer redistributed)
Update citation to arXiv v2 (2026)
Change license from MIT to CC BY 4.0
Update README.md
Upload Meta_variable_description.csv with huggingface_hub
Upload study_meta.csv with huggingface_hub
Upload meta/GSE230494_meta.csv with huggingface_hub
Upload antibody/GSE230494_antibody.csv with huggingface_hub
Upload bulk_gene_expr/GSE169159_gene_expr.csv with huggingface_hub
Update README.md
Upload bulk_gene_expr/GSE199750_gene_expr.csv with huggingface_hub
Upload bulk_gene_expr/GSE276544_gene_expr.csv with huggingface_hub
Upload bulk_gene_expr/GSE194378_gene_expr.csv with huggingface_hub
Update README.md
Upload croissant.json
Upload single_cell_gene_expr/combined.h5ad.gz with huggingface_hub
Upload single_cell_gene_expr/GSE201534_processed.h5ad with huggingface_hub
Update README.md
Update README.md
Update README.md
Update README.md
Delete bulk_sc_paired.html
Update README.md
Upload bulk_sc_paired.html
Update README.md
Update README.md
Delete example_dataset/1.txt
Upload 3 files
Create example_dataset/1.txt
Delete example_data/GSE194378_meta.csv
Delete example_data/GSE194378_gene_expr.csv
Delete example_data/GSE194378_antibody.csv
Delete example_data/GSE194378_raw.csv
Update README.md
Update README.md
Delete HR-VILAGE-3K3M.py
Upload bulk_gene_expr/SDY112_gene_expr.csv with huggingface_hub
Upload bulk_gene_expr/GSE48023_gene_expr.csv with huggingface_hub
Upload bulk_gene_expr/GSE199750_gene_expr.csv with huggingface_hub
Upload bulk_gene_expr/GSE101709_gene_expr.csv with huggingface_hub
Upload bulk_gene_expr/GSE59654_gene_expr.csv with huggingface_hub
Upload bulk_gene_expr/GSE74816_gene_expr.csv with huggingface_hub
Upload bulk_gene_expr/GSE29614_gene_expr.csv with huggingface_hub
Upload bulk_gene_expr/GSE117580_gene_expr.csv with huggingface_hub
