xingjiepan/PerturbMulti
Two datasets, namely diet_conditions_20240411 and crispr_screen_20240615, are included. Image files for each dataset are archived into several .tar files. Inside each .tar file, the name of each image file is the ID of the cell. The imaging channels of each file are Alb, polyT, rRNA, M6PR, CathB, Perilipin, Sqstm1, LC3b, TOMM20, Calreticulin, pS6RP, Na+/K+ATPase, SNAP23, TOM70, Rab7, mtRNA, Vimentin, Gapdh. The RNA expression levels, spatial coordinates, and conditions of individual cells… See the full description on the dataset page: https://huggingface.co/datasets/xingjiepan/PerturbMulti.
Two datasets, namely dietconditions20240411 and crisprscreen20240615, are included. Image files for each dataset are archived into several .tar files. Inside each .tar file, the name of each image file is the ID of the cell.
The imaging channels of each file are Alb, polyT, rRNA, M6PR, CathB, Perilipin, Sqstm1, LC3b, TOMM20, Calreticulin, pS6RP, Na+/K+ATPase, SNAP23, TOM70, Rab7, mtRNA, Vimentin, Gapdh.
The RNA expression levels, spatial coordinates, and conditions of individual cells of the dietconditions20240411 dataset are in the RNAscaleddietconditions20240411.h5ad file. The protein intensity levels are in the proteinintensitiesdietconditions20240411.h5ad file.
The RNA expression levels, spatial coordinates, and perturbation information of individual cells of the crisprscreen20240615 dataset are in the RNAscaledcrisprscreen20240615.h5ad file. The protein intensity levels are in the proteinintensitiescrisprscreen20240615.h5ad file (only for cells with targeting or control guide RNAs).