Datasetpublic

turmex2/pgc-autism

Autism Spectrum Disorder GWAS Summary Statistics (PGC) Mirror of Psychiatric Genomics Consortium (PGC) summary statistics for Autism Spectrum Disorder (asd2019), redistributed in a single Apache Parquet file for use with OpenMed Genomics. Source Primary citation: Grove et al., Nature Genetics 2019 Original distributor: Psychiatric Genomics Consortium (https://pgc.unc.edu/for-researchers/download-results/) This mirror exists only because the upstream OpenMed… See the full description on the dataset page: https://huggingface.co/datasets/turmex2/pgc-autism.

sourceHugging Faceotherupdated 6mo agoView on Hugging Face

0likes14downloads

Dataset Card

Autism Spectrum Disorder GWAS Summary Statistics (PGC)

Mirror of Psychiatric Genomics Consortium (PGC) summary statistics for Autism Spectrum Disorder (asd2019), redistributed in a single Apache Parquet file for use with OpenMed Genomics.

Source

—Primary citation: Grove et al., Nature Genetics 2019
—Original distributor: Psychiatric Genomics Consortium (<https://pgc.unc.edu/for-researchers/download-results/>)

This mirror exists only because the upstream OpenMed mirror became inaccessible. No modifications have been made to the underlying data; per-shard parquet files were concatenated into a single file for convenient streaming.

File

pgc-autism_asd2019.parquet -- one Apache Parquet file containing the full summary statistics table in the PGC's published schema (SNP, CHR, BP, A1, A2, FRQ, OR/BETA, SE, P, ...).

Usage

python

import polars as pl
df = pl.read_parquet(
    "https://huggingface.co/datasets/turmex2/pgc-autism/resolve/main/pgc-autism_asd2019.parquet"
)

License & terms of use

PGC summary statistics are released for non-commercial research use only. Do not attempt to re-identify individuals. Results derived from these data are not a clinical diagnosis. See the original publication for the full data-use agreement.