Datasetpublic

tunahanf/pgc-other

PGC Other Psychiatric Conditions — GWAS Summary Statistics Dataset Description Genome-wide association study (GWAS) summary statistics for Other Psychiatric Conditions phenotypes from the Psychiatric Genomics Consortium (PGC). This dataset contains multiple GWAS publications as separate subsets (configs). Each can be loaded independently. Usage from datasets import load_dataset # Load a specific GWAS (e.g., bpd2025) ds =… See the full description on the dataset page: https://huggingface.co/datasets/tunahanf/pgc-other.

sourceHugging Facecc-by-4.0updated 5mo agoView on Hugging Face

0likes152downloads

Dataset Card

PGC Other Psychiatric Conditions — GWAS Summary Statistics

![License: CC BY 4.0](https://creativecommons.org/licenses/by/4.0/)

Dataset Description

Genome-wide association study (GWAS) summary statistics for Other Psychiatric Conditions phenotypes from the Psychiatric Genomics Consortium (PGC).

This dataset contains multiple GWAS publications as separate subsets (configs). Each can be loaded independently.

Usage

python

from datasets import load_dataset

# Load a specific GWAS (e.g., bpd2025)
ds = load_dataset("OpenMed/pgc-other", "bpd2025")
print(ds)

Available Configs

python

from datasets import get_dataset_config_names
configs = get_dataset_config_names("OpenMed/pgc-other")
print(configs)

Subsets (Publications)

Config	Phenotype	Journal	Year	PubMed	Rows	License
`bpd2025`	Borderline Personality Disorder	Nature Genetics	2025	Pending	30,901,961	CC BY 4.0
`ciac`	Clozapine-Induced Agranulocytosis	Nature Communications	2014	25187353	—	CC BY 4.0

Data Format

All data has been converted to Apache Parquet format with shards of 10,000 rows. Common columns include:

Column	Description
`SNP` / `ID`	SNP rsID or variant identifier
`CHR`	Chromosome
`BP` / `POS`	Base-pair position (typically GRCh37/hg19)
`A1` / `ALT`	Effect allele
`A2` / `REF`	Non-effect (reference) allele
`OR` / `BETA`	Odds ratio or effect size
`SE`	Standard error
`P`	P-value
`INFO`	Imputation quality score
`FRQ` / `MAF`	Allele frequency
`_source_file`	Original source filename

Note: Column names vary between publications. The _source_file column tracks the original file each row came from.

Citation

When using any subset, please cite:

1.The original publication (see PubMed links above)
2.The data DOI from Figshare (see supplementary metadata)
3.Acknowledge the PGC:

"Data were obtained from the Psychiatric Genomics Consortium — https://pgc.unc.edu/"

Terms of Use

This dataset is released under the [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/) license.