prism-oncology/novae
Description Full novae dataset, including: All the spatial transcriptomics samples used to train Novae Protein samples used in the article Some Visium and Visium HD samples Synthetic data samples You can download this dataset from the API, see novae.load_dataset See here the list of available models trained on this dataset. [!NOTE] Note that Novae was trained on the image-based spatial transcriptomics samples. This means that it was not trained on the Visium/VisiumHD samples… See the full description on the dataset page: https://huggingface.co/datasets/prism-oncology/novae.
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remove deprecated file: metadata all
add missing data files
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add tqdm
can run add_files from anywhere
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fix swapped columns for visium samples in metadata file
add dry run mode
add script to add missing data files
add Xenium_V1_mouse_pup_outs
add 3 visium samples
remove nan from mgc samples
add visium hd sample
minor contributing.md update
adding cosmx mgc files
adding toy datasets
rename specie -> species
add human breast + mouse brain
add one mouse
update
add metadata
use h5
add colon files 2
add colon files
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