Datasetpublic

popsily/ucsf-pdgm-download-notebook

UCSF-PDGM Download Notebook Kaggle notebook to download FLAIR + tumor_segmentation NIfTI files from the UCSF-PDGM dataset on TCIA. Download the notebook Direct link: download_ucsf_pdgm_kaggle.ipynb What it does Installs Ruby + IBM Aspera CLI (ascli) + Aspera SDK inside a Kaggle notebook Downloads UCSF-PDGM v5 metadata CSV and selects 100 patients (50 IDH-mutant + 50 IDH-wildtype) Selectively downloads only FLAIR + tumor_segmentation NIfTI files (~4… See the full description on the dataset page: https://huggingface.co/datasets/popsily/ucsf-pdgm-download-notebook.

sourceHugging Faceupdated 5mo agoView on Hugging Face

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UCSF-PDGM Download Notebook

Kaggle notebook to download FLAIR + tumor_segmentation NIfTI files from the UCSF-PDGM dataset on TCIA.

Download the notebook

Direct link: download_ucsf_pdgm_kaggle.ipynb

What it does

—Installs Ruby + IBM Aspera CLI (ascli) + Aspera SDK inside a Kaggle notebook
—Downloads UCSF-PDGM v5 metadata CSV and selects 100 patients (50 IDH-mutant + 50 IDH-wildtype)
—Selectively downloads only FLAIR + tumor_segmentation NIfTI files (~4 GB total, not the full 142 GB)
—Verifies all files are non-empty
—Uploads the result as a private Kaggle dataset

Why Aspera?

UCSF-PDGM NIfTI files are only available via IBM Aspera Faspex. They are not in TCIA's NBIA REST API (which only serves DICOM). There are no wget/curl URLs for individual files.