plantcad/evolutionary-constraint

Evolutionary constraint prediction Reproducing this dataset import pandas as pd CENTER_POSITION = 255 NUCLEOTIDES = list("ACGT") df = pd.read_csv("hf://datasets/kuleshov-group/cross-species-single-nucleotide-annotation/Evolutionary_constraint/valid.tsv", sep="\t") df = df.rename(columns={"sequences": "seq"}) df["chrom_pos"] = df.pos df["pos"] = CENTER_POSITION df["ref"] = df.seq.str[CENTER_POSITION] def subsample(df, n, seed): return (… See the full description on the dataset page: https://huggingface.co/datasets/plantcad/evolutionary-constraint.