omnibioai/omnibioai-sif-images
OmniBioAI SIF Images 🧬 500+ native ARM64 Singularity (SIF) container images for bioinformatics, built on NVIDIA DGX (aarch64). Tool Categories Category Tools Genomics & Alignment BWA, STAR, HISAT2, Minimap2, Bowtie2 Variant Calling GATK, DeepVariant, Clair3, Mutect2 RNA-seq Salmon, Kallisto, DESeq2, edgeR Single Cell Seurat, Scanpy, Cell Ranger, Harmony Epigenomics MACS2, deepTools, Bismark Metagenomics Kraken2, MetaPhlAn, QIIME2 Proteomics… See the full description on the dataset page: https://huggingface.co/datasets/omnibioai/omnibioai-sif-images.
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1# OmniBioAI SIF Images 🧬2 3500+ native ARM64 Singularity (SIF) container images for bioinformatics,4built on NVIDIA DGX (aarch64).5 6## Tool Categories7 8| Category | Tools |9|---|---|10| Genomics & Alignment | BWA, STAR, HISAT2, Minimap2, Bowtie2 |11| Variant Calling | GATK, DeepVariant, Clair3, Mutect2 |12| RNA-seq | Salmon, Kallisto, DESeq2, edgeR |13| Single Cell | Seurat, Scanpy, Cell Ranger, Harmony |14| Epigenomics | MACS2, deepTools, Bismark |15| Metagenomics | Kraken2, MetaPhlAn, QIIME2 |16| Proteomics | MaxQuant, MSFragger, DIA-NN |17| Structural Biology | AlphaFold2, ColabFold, ESM2 |18| ML/DL | PyTorch, TensorFlow, JAX, sklearn |19| Drug Discovery | DiffDock, GNINA, RFdiffusion |20| Population Genetics | PLINK2, ADMIXTURE, SHAPEIT5 |21 22## Usage23 24# Download a SIF file25 26```27huggingface-cli download man4sihg/omnibioai-sif-images \28 bwa_arm64.sif --repo-type dataset29```30# Run with Singularity31 32```33singularity exec bwa_arm64.sif bwa mem ref.fa reads.fastq34```35 36## Part of OmniBioAI Studio37 38🌐 Website: https://omnibioai.org39 40📦 Platform: https://github.com/man4ish/omnibioai-studio41 42## Architecture43- All images: native ARM64/aarch6444- Built on: NVIDIA DGX Spark45- Format: Singularity SIF46 47## Stats48- 500+ SIF images49- 276GB+ total size50- 654+ downloads last month51- Updated: July 202652 53## License54Apache 2.055EOF56 57