nicolynnvila/splicing_epistasis_okgp_panelfree
splicing_epistasis_okgp_panelfree Panel-free 1KG cis-pair universe for the splicing-epistasis paper §2A patch. Filters 1000 Genomes phase-3, cis-pair within 100 nt both constituents ≥ 3 carriers d_ss_min ≤ 100 nt (splice-relevant subset) TopLD-overlap excluded (haplotype-block confound) Rows 124,888 pairs across 1,746 genes arm split: {'unobserved': 109126, 'observed': 15762} Columns epistasis_id, arm, gene, chrom, mut1, mut2… See the full description on the dataset page: https://huggingface.co/datasets/nicolynnvila/splicing_epistasis_okgp_panelfree.
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